barSeed - Barley Seed Development Database

Probe CUST_23348_PI390587928

Source Contig U35_47612

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23348_PI390587928	Hv_44K_v2	TGCACAGCACTTCATCTACATTGAGAATCAGTATTTCCTTGGCAGCTCATTCGCGTGGAA	601	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356633	3020	2e-24	1656 - 1715	100	60 / 60	plus	ABC03042 ABC03043
MLOC	MLOC_71259.1	1497	2e-24	1026 - 1085	100	60 / 60	minus	ABC03042 ABC03043
JLOC1	JLOC1_47343.1	1966	8e-25	414 - 473	100	60 / 60	plus
Harvest21	ABC48815	710	3e-25	602 - 661	100	60 / 60	plus
Harvest35	U35_47612	710	3e-25	602 - 661	100	60 / 60	plus

Contig Sequence (710 bp)

>U35_47612 710 Hv_44K_v2
CCGACATCGGCAGGAGCGCCGTCATGGGCTTGCAGACTGCCTACATGATCAGCCACCACC
AGAAGATTATCGCGGTCGACCACGACATGCCGGTGAGGGGAAGCTCGAGCCGCCGCCGCA
TCGTCAGCTTCGTCGGCGGCCTCGACCTCTGCGACGGGCGCTACGACACGCAGTTCCACT
CCCTGTTCAGGACGCTGGACACGGCGCACCACAACGACTTCCATCAAACCAATTTCGTCG
ACACGTCCATCAGCAAGGGTGGGCCGAGGGAGCCATGGCACGACATCCATGCCAAGATCG
AAGGTCCGGCCGCGTGGGACATCCTCTACAACTTCGAGCAGAGGTGGAGGAAGCAAGGCG
GTGACAATGACCTCCTCGTCGATCTGAAAGCCTTGGCGAACCTGATCATACCGCCATCAA
CCGTTACGTTCCCCGATGACCAGGAGGCGTGGAATGTGCAGGTCTTCCGGTCCATCGACG
GCGGCGCAAGCTTCGGCTTTCCTAACACCCCTGAGCAAGCTGCTCGATCAGGCCTTGTCA
GTGGCAAGAACAACACCCTTGACAGGAGCATACAGGATGCCTACATCCATGCGATACGCC
GTGCACAGCACTTCATCTACATTGAGAATCAGTATTTCCTTGGCAGCTCATTCGCGTGGA
AGGCCGACGACATAAGGCCAGAGGAAATCGAGGCGTTGCATCTGATTCCC

Homology of Contig U35_47612 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g40190.1	818	7e-131	protein\|phospholipase D, putative, expressed
Brachypodium v1_2	Bradi1g36580.1	824	7e-134
Arabidopsis v10	AT1G52570.1	810	1e-107	\| Symbols: PLDALPHA2 \| phospholipase D alpha 2 \| chr1:19583940-19586551 REVERSE LENGTH=810