barSeed - Barley Seed Development Database

Probe CUST_23326_PI390587928

Source Contig U35_5583

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23326_PI390587928	Hv_44K_v2	TTGTGGGTCGATCGGTTGGCTCAAGGTTGAGGTTTTCTTACTCAACATTTTTCTCCTCTC	1483	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.842	0.720	0.588	1.345	1.198
Raw	3.201	4.095	3.044	3.993	3.454	3.684

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360038	3048	2e-23	2914 - 2971	100	58 / 58	plus	ABC12308 ABC50457
JLOC1	JLOC1_25054.1	643	5e-22	503 - 560	98	57 / 58	plus
Harvest21	ABC12308	1547	3e-25	1484 - 1543	100	60 / 60	plus	ABC12308
Harvest35	U35_5583	1547	3e-25	1484 - 1543	100	60 / 60	plus

Contig Sequence (1547 bp)

>U35_5583 1547 Hv_44K_v2
GCGGAAACTGGGGCTCGCCTTCTGGTAACAAGGTTTCTCAACCAATATGTAACCATCGGT
AACATGACCATTCTTGAAGAAGGTGGCACTATGTACAGTTTTGGTGAAGTAGACAAAAAA
TGCCTTGTCAAAACTGTCTTGCGAGTTCATGACCCTCTCTTCTACTGGAAGGTCGCCACC
GAAGCAGACCTTGGTATGGCAGACGCATATATCAACGGTTATTTTTCTTTTGTTGATAAA
AGAGAAGGGCTCCTGAATCTTTTCCTGATTCTCATTGCTAACAGAGATGCGCAGAAGAGT
AATAACAGCGCTGCCAGTAAAAGGGGTTGGTGGACGCCCATGCTTTTAACAGCTGGGATT
GCATCGGCAAAATATTTCCTCCGCCACATCTCAAGGAAGAATACTGTCACGCAAACTCGC
CGAAACATCTCTCAGCACTATGATCTGAGTAATGATTTCTTCTCACTTTTCCTGGATCCA
TCGATGACTTACTCTTGTGCAGTATTCAAGGTGGAAGATGAAAGCCTAGAAGTAGCCCAG
CAACGTAAAGTTAATCTACTAATCAAGAAGGCTAAAGTGGAGCGAAATCATCATGTTCTT
GAAATCGGTAGTGGTTGGGGCAGCTTGGCGATGCAAGTGGTGAAGCAAACTGGATGCAAA
TATACAGGGATTACACTATCTGAGGAGCAACTTAAATACGCTGAAATGAAAGTGAAGGAA
GCTGGCTTGGAGGATCGTATAACTTTCCTGCTGTGTGACTACCGTCAAATACCAAGTCGG
AGTAAGTACGACAGGATCATATCATGCGAAATGATTGAAGGGGTTGGTCATGAATTCATG
GATGATTTCTTTGGCTGTTGCGAGTCCCTATTGGCTCCAGATGGTCTATTTGTCCTCCAG
TTTATATCGATTCCAGAAGAACGGTATGAGGAATACAGGAGAAGTTCAGACTTCATAAAG
GAATACATCTTTCCAGGGGGTTGCCTTCCTTCCTTGGCCCGGATCACGTCTGCCATGTCC
GCTGCGTCAAGGCTCTGCATCGAGCAGGTTGAGAACATCGGATACCATTACTACCCGACG
CTGATACGCTGGAGGGATAACTTTATGGCCAACAAAGATGCAATTTTGGCTCTGGGATTT
GACGACAAGTTCATTCGTGTATGGGAGTATTATTTCATATACTGCGCGGCCGGTTTCAAG
TCACGGACGCTTGGAACTTACCAGATTGTATTTTCGCGACCTGGCAATGACAAGCTGGCC
AACACCGATAACCCCTTCGCAAGTCTTCCTGCAGCCTAGCCTTAGGTCACTGGACAAGTG
AACGACCATCCATATTCATACCTACATATAATAGCATGCGTCTATTTATTACAAAGTAAG
GTTGAGAAATTGTAATTCCATAGGAGTGTGTGAAAATATTGACCATTGTATGAACTATTA
GTGCTACCACAGGGTGATTCGTTGATTGATTCATGTAACACATTTGTGGGTCGATCGGTT
GGCTCAAGGTTGAGGTTTTCTTACTCAACATTTTTCTCCTCTCGGCC

Homology of Contig U35_5583 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g29220.1	466	protein\|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed
Brachypodium v1_2	Bradi5g02490.1	795
Arabidopsis v10	AT3G23470.1	461	Cyclopropane-fatty-acyl-phospholipid synthase \| chr3:8415565-8418120 FORWARD LENGTH=461