barSeed - Barley Seed Development Database

Probe CUST_23310_PI390587928

Source Contig U35_5599

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23310_PI390587928	Hv_44K_v2	ATAAGCTTCTTTGCATTCAAATTTAAACTATTTGAGTCGGTCACAGGCCAGTACAACTTT	1084	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43777.4	2547	3e-21	2473 - 2532	97	58 / 60	plus	ABC05196 ABC05866 ABC12346 ABC12347
JLOC1	JLOC1_28312.1	2540	2e-21	2442 - 2501	97	58 / 60	plus
Harvest21	ABC12346	682	3e-25	623 - 682	100	60 / 60	plus	ABC12346
Harvest35	U35_5599	1144	3e-25	1085 - 1144	100	60 / 60	plus

Contig Sequence (1144 bp)

>U35_5599 1144 Hv_44K_v2
GGGAAAATGATGGCTGCTAAGTATGCCCGTGAAAACAATGTTCCCTATCTTGGCATATGC
CTTGGCATGCAGCTTGCTGTTGTAGAGTTTGCGCGCCATGTTATGAAATTCCCTGATGCA
GACAGCACAGAATTTAATCCCAATACGAAGACCCCATGTGTTATTTTTATGCCAGAGGGT
TCAAAAACACATATGGGTGGGACCATGCGCCTTGGATCAAGGAGAACATTTTTCAAGGTT
ACTGACTGCAAATCTGCCAAGCTCTATGGTGATGTCAACTTCGTAGATGAGAGGCATCGG
CACAGATATGAGGTAAATCCTGATATGGTGCCAGCATTTGAAAATGCCGGACTTCAGTTT
GTTGGCAAGGACGAGACTGGACAGAGAATGGAGATCATTGAAATACCTGATCACCCGTTC
TTCATCGGCGTCCAATTCCATCCGGAGTTCAAGTCAACGCCTTCAAAACCTTCACCTCTA
TTTGTCGGACTAATCGCTGCAGCGTGCGGGCAACTGGACCAGGTGCTGCAGGACAGCTGC
AATGGCCATGTGGTTGTGGCTAAACACAAGCTTGGCGACAGCTCCTCAACACCCCTAATA
CACCAGAACGGGCACGCGCAGAAGCAAGCCAATGGTGGTGTAGCAAATGGAACCTGCCAT
GCCAACGGCAATGGCAGTACCCATGGTTAGCGCACCGTCAATTTCGCCAAGGGGGTCGTC
TTGCCTGTCTTCTGTGGTCCTCATCTTCCCGACTGCGACAATGGCTGAGCAACATATCAG
CAGGGCCGGGCAACGGCCCAGAGCCCAGGGAAAATTGAGGACGACATGAGCAACTTGTAT
AGTATTAGGGTTCTGTGCTGATATGCAGGCGAATGTTTTGATCCTTGCGTATGGACTAAA
TAATGAGCTAGACATTTTAGAAAGTTCAGTTTTATCGTTGCAGAGAGGAAGTTCAGACGT
AGAGCCTGTGTGGTTGGGTGTGTACTTTGAAACTGATGGCACTGTTTTTTCCCCAGTCAA
TTCCAATTTCTTTCTTTCCCAGTTGGACCCAAGCAGACTACTTGTAGTTGTAGCGCTAAC
TAAAATAAGCTTCTTTGCATTCAAATTTAAACTATTTGAGTCGGTCACAGGCCAGTACAA
CTTT

Homology of Contig U35_5599 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g43020.1	606	5e-125	protein\|CTP synthase, putative, expressed
Brachypodium v1_2	Bradi2g14730.1	606	2e-136
Arabidopsis v10	AT3G12670.1	591	6e-96	\| Symbols: emb2742 \| CTP synthase family protein \| chr3:4020351-4024086 REVERSE LENGTH=591