barSeed - Barley Seed Development Database

Probe CUST_23308_PI390587928

Source Contig U35_10604

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23308_PI390587928	Hv_44K_v2	GTACCCAGTTGAGATTCAGCTTGAGAAAGATGCAGTTTAAGATGTTGTGCTCACTTCAAA	650	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65319.2	3493	2e-24	2 - 61	100	60 / 60	minus	ABC40649
MLOC	MLOC_65319.1	6744	2e-24	3254 - 3313	100	60 / 60	minus	ABC13025 ABC40649
JLOC1	JLOC1_42978.2	3593	8e-25	3430 - 3489	100	60 / 60	plus
Harvest35	U35_10604	724	3e-25	651 - 710	100	60 / 60	plus

Contig Sequence (724 bp)

>U35_10604 724 Hv_44K_v2
GACGACGGCGTGGACGTGGTTGGCGGCGTGGCCGTGCTCACCGAGCACGACGCGCCCGCG
GCACGTGCTGCGGTTGGTGCGGCAGCACCGCAACGACGAGCAGGGCAGCGGCGCTGTGCT
GCGGCGGTGCTTCTGGGCCCTGGAGAGCTTCCTCGAGAACGGCGGCGACCGGTGCGTCAG
GGAGGTGACCTCCGACCGCGCGCTGCCGAGCGCGCTGGTGGGCGCCTTCCACAAGGGCGA
CACCGCCACCAAGCAGGTCGCCGAGAGCGTGCTCCGGAGCCTGCACCGGATGCCAGACTA
CTCGGCCACCTACGTCTCCGTCGAGCTGTAGCAAACATCCCTTTTGCCGTCTTCTTGGCT
TCATACCGTCCATCAGCTGGTGCATTGTCTGGTGTAACTAGATTTTACACAGAGAAAGAT
GAGGTAAAATGGAATTCTGCAGATGCAATGTAACTAAAAGGGTCATAGTGGGTACGATAA
TATGTATAGTTTTTCGTTCCTGTTTGTTTTCTTAGGTGTAATTAAGGTTAGGCTTTGATG
ATATCGTTAACACAAGATTGTCTTGGTTGGTTTGGTTTTTTTCTCCGGAAAGATGTGCTT
CAAAATTGTGTGTATCCAGAGCAAAATCATATGCATCCAGCACGGGTGGGGTACCCAGTT
GAGATTCAGCTTGAGAAAGATGCAGTTTAAGATGTTGTGCTCACTTCAAAAAAAAAAAAA
AAAA

Homology of Contig U35_10604 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None