barSeed - Barley Seed Development Database

Probe CUST_23270_PI390587928

Source Contig U35_22613

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23270_PI390587928	Hv_44K_v2	CGTTTCTCAATTGCTTCTGTTTGTTGCTTGCCCAATGTTCGACAGTAAACCCAAACTCGA	463	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9317.3	1487	6e-24	829 - 887	100	59 / 59	plus	ABC17787
MLOC	MLOC_9317.7	1645	6e-24	808 - 866	100	59 / 59	plus	ABC17787
MLOC	MLOC_9317.8	1857	6e-24	808 - 866	100	59 / 59	plus	ABC17787
MLOC	MLOC_9317.1	1804	6e-24	830 - 888	100	59 / 59	plus	ABC17787
MLOC	MLOC_9317.6	1312	6e-24	815 - 873	100	59 / 59	plus	ABC17787
MLOC	MLOC_9317.4	1481	6e-24	829 - 887	100	59 / 59	plus	ABC17787
MLOC	MLOC_9317.5	1812	6e-24	829 - 887	100	59 / 59	plus	ABC17787
MLOC	MLOC_9317.2	1473	6e-24	830 - 888	100	59 / 59	plus	ABC17787
MLOC	MLOC_28998.1	688	3e-21	278 - 337	97	58 / 60	plus	ABC17787
JLOC1	JLOC1_6093.5	1781	3e-24	894 - 952	100	59 / 59	minus
JLOC1	JLOC1_6093.4	1396	3e-24	509 - 567	100	59 / 59	minus
JLOC1	JLOC1_6093.3	1716	3e-24	829 - 887	100	59 / 59	minus
JLOC1	JLOC1_6093.2	1439	3e-24	552 - 610	100	59 / 59	minus
JLOC1	JLOC1_6093.1	1146	3e-24	259 - 317	100	59 / 59	minus
JLOC1	JLOC1_19363.1	687	2e-21	351 - 410	97	58 / 60	minus
Harvest21	ABC32973	497	3e-25	123 - 182	100	60 / 60	minus
Harvest21	ABC17787	1163	6e-22	464 - 523	97	58 / 60	minus	ABC17787
Harvest35	U35_22613	1163	3e-25	464 - 523	100	60 / 60	minus

Contig Sequence (1163 bp)

>U35_22613 1163 Hv_44K_v2
GCTGGCTCTCCCCTCTCCTTGCCCCGAAGTCACCGCCGCCGCCACTGCCCACGCTGGGCG
CTTCCGACGACCTACGGCGGCACGCAGTACGCTCCCGAGCTCCCCACGGTCTGCTCGTCC
CTCTCCTCCGGACAGATTTTGGCTCCCATCCTGAACCGCCCGGTCGGAACCACCCCGTGG
CTAGGGTTTCGGGCAGGGCTGCGCCGGCGCATCTCCAGCGGCCCTAGGAGCAGGATCTGT
TGTACAATTAGAGTCTGCAGTTTGCTTTCCAGGAGTAGGAGATGGATCTCTGTTCCTGTG
TTTGGGCAAAAGAAAATTCTGAATTTGGCAACAAAAGTATGGAGTTCTCTGGATCATCAG
GATCATTCATATACACACCTGAAACTCAAAGCGAGATAGCCACAGTTATTCAGGGGATTT
TGCTTGGTCTTTTTCTACTTCCCTTGTTGTACAAAAGTTCTCTTCGAGTTTGGGTTTACT
GTCGAACATTGGGCAAGCAACAAACAGAAGCAATTGAGAAACGAGCAGAAAAAAGAGCAG
GTTTCCGTCATAGATTTATCTTCTTTTGATGATTCGGCGACAGTTTGCTTCCGTCTTCTT
GTGAATTCTTCGTTACGTTCATGTATCAATGTTTGCCTTTTTCCTCCCGCGACACGATTC
CTGTGTTTTGTAGTTAATTTGGAGCTTCTAACTTCCTCTTCGGTTGCGACATATTCAGGG
TTCTCCATTGCAATTGAATCCTTTGATGGTGTATTGCGTTTCAATTGGCGACGAACTTCA
ATTTGTTCTATTCTTGCTTTCTTCCGTTCTGGTTGCATGTTTTCGTATTTTTTCTTTTCT
TGTGCGCGTTGTGTCGCCTTTTGTTCTGGTGTCTTTCCTGAATATTTCTTTTGATGATAG
GCTTCGCGCCTTTTTTTTCAGTTTGTCCTTGCTTCCTCGGTCATCCGTTCATTCCGCTCT
TTATTTTTCCTTTTTATTTTTTCCTTTGACTCCTGCCTTTCTTCATTTGTCATCCGTGCA
TACCGATCTCTATCTCTCTTTCTTTTTTGTTCTTTGGCTGCATCCATTTGCTCCAAATAA
GTTTCCTGTATGAGATTTTGTATAATGTAAGAATTCCAAATTAATGATATAATAGATTTA
ATCTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22613 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None