barSeed - Barley Seed Development Database

Probe CUST_23238_PI390587928

Source Contig U35_10651

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23238_PI390587928	Hv_44K_v2	GGTGTCCTGGTGGTTATGCTTGGAACAGAGTGTATGTGAAATTAATTAATGGAATAAAAA	308	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_46496.1	430	2e-24	162 - 221	100	60 / 60	plus	ABC19631 ABC23290 ABC44594
JLOC1	JLOC1_30107.1	282	8e-25	187 - 246	100	60 / 60	plus
Harvest21	ABC23290	395	3e-25	308 - 367	100	60 / 60	plus	ABC23290
Harvest35	U35_10651	396	3e-25	309 - 368	100	60 / 60	plus

Contig Sequence (396 bp)

>U35_10651 396 Hv_44K_v2
TGCGCCTCTGCAACCTTATTGGTCCCCGTAGTCCATGCCACAGCTATCATGAGGGCCTAT
TGTCGTTACCGCGCAGCCCACGTTTATCTGCTTGCTGCTATTTCTGCTATCGCTGAAACC
AACCAGGAGTTACTGGCCTTAAGGCACCAAGGAAGCAAAGAAAAGGACAACACTCAAACA
AAAGGAGAACACTCACAAGGAACCATGAAGCCAGCGATCCGTGTCACCTGGATATTTAGC
CTTTATTTTTTACAACACATGTCTCATACTAGCATCTTTTAGCTGTCATTTTTGTGAACC
TGATGTATGGTGTCCTGGTGGTTATGCTTGGAACAGAGTGTATGTGAAATTAATTAATGG
AATAAAAAATGGTTGGTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_10651 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None