barSeed - Barley Seed Development Database

Probe ABC19631

Source Contig ABC19631

barSeed

Links

Affymetrix Source Sequence (730 bp)

>ABC19631 730
GAGTTCAAAATAATCATTTTAAAGATGTGGAGTAATTGGCAAAGATAAGGGTACATTATA
TGGGTCGGAACAATGGTAATATGTCCATGGTCATCAACAAGAGTGTGATTTGCATACCTT
TGTACGATATTATTAAAGGTATTATTGTTGCTTTGTTGATTTTTGTAGGCTCTTTTGGAC
GACAAAAAGGTAAGCTATCTTACAGTTAAACAGTTGGAAGAAGTATTACAATATATTCTC
CGAAGTATTATTTCATTACCAATTTTCTAAGGTTACTCCCAGCTTTCTTCTTTACCAGGG
AATTTCTATCATGATTCCTCTCTTTCCTTGCTTTACCTTGTTAGATTTTTGTTTCTGTTC
ATATACAATATGAATATTTTTCTCTCATATACTCCTTCTGCTGGAAACTTGCTGATTTTA
GGGGTGCTGCTACTACTGCAAAGACCGTTTCATAAAAAACAAGTAGTGGTTGATCGACAC
TTTGGGATGAGCGTGCATGTGTGGAAGGAAATAAAAGGACAACGCTCAAACAAAAGGACA
ACACTCACAAGGAACCATGAAGCCAGCGATCGTGTCATCTCGATATTTAGCCTTCATTTT
GTACAACTCATGTCTCATAGTAGCATCTTTTAGCTGTCCTTTTTGTGAACGTGATGTATG
GTGTTCTGGTGGTTATGCTTGGAACAGACTAAAGCCTGTGTATGTACAATTATCTAATTG
AAATAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK250474.1	2773	0.0	2032 - 2761	99	726 / 731	None	ABC19631 ABC23290 ABC44594
MLOC_30893.1	1438	0.0	49 - 552	99	503 / 504	None	ABC19631
MLOC_30893.2	1275	4e-141	128 - 399	100	272 / 272	None	ABC19631
MLOC_30893.3	1162	2e-95	103 - 292	100	190 / 190	None	ABC19631
AK369253	2781	6e-85	2539 - 2771	91	213 / 233	None	ABC01633 ABC01634 ABC19631 ABC23290 ABC44594
MLOC_27798.1	253	2e-74	91 - 251	98	158 / 161	None	ABC19631
MLOC_29776.1	223	8e-74	23 - 223	92	185 / 201	None	ABC19631 ABC23290 ABC44594
MLOC_46496.1	430	6e-70	4 - 190	93	173 / 187	CUST_23238_PI390587928	ABC19631 ABC23290 ABC44594
MLOC_33684.1	188	2e-59	1 - 138	97	134 / 138	None	ABC19631