barSeed - Barley Seed Development Database

Probe CUST_2317_PI390587928

Source Contig U35_23420

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2317_PI390587928	Hv_44K_v2	AAAGATGGCTATGCTCAAACGCTTAGCACTCGCACTCTTCGTTAGCTTCTTCTCATGCTA	37	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369108	1708	2e-24	39 - 98	100	60 / 60	plus	ABC12286 ABC42051
MLOC	MLOC_41766.1	761	2e-24	41 - 100	100	60 / 60	plus	ABC12286
JLOC1	JLOC1_27150.1	761	8e-25	41 - 100	100	60 / 60	plus
Harvest21	ABC42050	536	3e-25	18 - 77	100	60 / 60	plus
Harvest35	U35_23420	629	3e-25	38 - 97	100	60 / 60	plus

Contig Sequence (629 bp)

>U35_23420 629 Hv_44K_v2
ACAGCGAAGTCACGCACCATCATCAGTGCGGGAAGCAAAAGATGGCTATGCTCAAACGCT
TAGCACTCGCACTCTTCGTTAGCTTCTTCTCATGCTACCTGACATCGGTCCCTTCCCTAG
CCTCCCCTGATGACTTCCTCCAATGCTTACGGGACAAGATACCTAGCGAGCTCCTGTACA
CCCAGAGCTCGAGCAGCTTCGCCGGCGTGCTTGTCTCCTCCATTAGGAGCGCCAGATTCT
TCACCAACACCACGGTGAGGCCGCTCTGCGTCGTGAGGCCGACCGACGCCTCCCACGTCC
AGGCCGCCGTGCTCTGCGGCCGCACGCAGGGCGTGCGTCTCCGCGTGCGCAGCGGCGGGC
ACGACTACGAGGGCCTGTCGTACCGGTCGGTGCGGCCCGAGGTGTTCGGAGTGGTCGACC
TCGCCGACCTCCGCGCCGTGAGTGTGAATCAGTCGGAGACCACTGCTTGGGTCGACTCCG
GCGCGACCATCGGGGAGCTGTACTACACCATCGCCAAGGACAACTCCCAGCTCGCGTTCC
CGGCCGGCCTGTGCCCGACCATCGGCGTGGGCGGCCACTTCAGCGGTGGCGCCATCGGCA
TGATGATGCGCAAGTATGGCCTCGCCGTC

Homology of Contig U35_23420 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35650.1	527	1e-76	protein\|reticuline oxidase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi3g09380.1	543	3e-79
Arabidopsis v10	None