barSeed - Barley Seed Development Database

Probe CUST_23156_PI390587928

Source Contig U35_22727

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23156_PI390587928	Hv_44K_v2	ACCTTATGTTTTTCCCTACTAACAACAGCTATGGTCTTGCTAGTGTTGCTGGAAATGCTG	753	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.610	1.201	1.192	0.692	0.457	0.399
Raw	259.762	286.584	256.815	212.086	53.558	52.622

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68734.2	2171	2e-24	978 - 1037	100	60 / 60	plus	ABC08500 ABC12666 ABC17636 ABC37701
MLOC	MLOC_68734.1	2386	2e-24	1118 - 1177	100	60 / 60	plus	ABC08500 ABC12666 ABC17636 ABC37701
MLOC	AK252801.1	1985	7e-23	455 - 514	98	59 / 60	plus	ABC08500 ABC12666 ABC17636
MLOC	MLOC_6852.1	1859	7e-23	340 - 399	98	59 / 60	plus	ABC08500 ABC12666 ABC17636
JLOC1	JLOC1_45507.1	2580	8e-25	1118 - 1177	100	60 / 60	plus
JLOC1	JLOC1_4488.1	1914	4e-23	341 - 400	98	59 / 60	plus
Harvest21	ABC17636	815	3e-25	754 - 813	100	60 / 60	plus	ABC17636
Harvest35	U35_22727	816	3e-25	754 - 813	100	60 / 60	plus

Contig Sequence (816 bp)

>U35_22727 816 Hv_44K_v2
GCCCTGGCCCTGGTGTTACCCCAAGGATTGGTTTGACACCATCCAGAGATGGAAATGCCT
TTGGGATAACTCCAAAAGGAACCCCTTTCAGGGATGAGCTTCACATAAATGAAGAGGTGG
AAATGCAAGACAGCGCTCAGCTTGAGCTTCGTAGGCAAGCAGAGCTGAGAAGAGGTTTGC
GGTCTGGTTTTGCTTCTATTCCACAGCCTAAGAATGAGTACCAGATAGTTATGCCACCTA
TCACAGAGGAGAAGGAAGAAGCAGAAGAGAGAATTGAAGAGGATATGTCAGACAAGTTAG
CACGAGAAAGGGCTGAGGAACAAGCAAGGCAGGAGGCATTGCTCAGAAAGAGGTCCAAAG
TGTTGCAGAGGAGTTTGCCTAGGCCACCTGCTGCTTCAGTGGAGATTCTCCGGCAATCTC
TGATTAAAGGTGGTGAAACCAGAAGTACCTTTGTGCCTCCTACATCACTTGAACAAGCTG
ACGAGCTAATAAATGAGGAACTCCTTAGGCTCCTTGAGCATGATAATGCTAAATATCCTC
TTGATGAACAAACTCAAAGAGAGAAAAAGAAAGGCAGCAAGCGTCAGGCAAATGGGGCAG
CTTTCGTCCCTGAAATCGAAGGTTTTGATGAGCATGAACTAAAAGAGGCAAGTTCTATGG
TTGAGGAGGAGATTCAGTATCTTCGTGTGGCCATGGGCCATGAAAATGAATCTTTTGAGG
ATTTTGTAAAGTCACATGATGCATGCCAGGAGGACCTTATGTTTTTCCCTACTAACAACA
GCTATGGTCTTGCTAGTGTTGCTGGAAATGCTGATA

Homology of Contig U35_22727 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g28090.1	973	3e-116	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi4g07110.1	983	2e-127
Arabidopsis v10	AT1G09770.1	844	2e-77	\| Symbols: ATCDC5, CDC5, ATMYBCDC5 \| cell division cycle 5 \| chr1:3162002-3165122 FORWARD LENGTH=844