- Probe CUST_23093_PI390587928
- Source Contig U35_3926
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23093_PI390587928 | Hv_44K_v2 | TCAACCCTAGTTATGATTCATGGCAGATACGAAATGTTCTTGTACCTGATTCATCTGCTC | 945 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.902 | 1.154 | 0.798 | 0.827 | 1.246 | 1.109 |
| Raw | 3.166 | 8.146 | 5.029 | 8.563 | 2.887 | 2.765 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK365666 | 3634 | 2e-24 | 1798 - 1857 | 100 | 60 / 60 | minus | ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC09942 ABC09967 ABC11693 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951 |
| MLOC | AK354002 | 1661 | 2e-24 | 963 - 1022 | 100 | 60 / 60 | plus | ABC09967 ABC11693 |
| MLOC | MLOC_55103.2 | 1352 | 2e-24 | 530 - 589 | 100 | 60 / 60 | minus | ABC09967 ABC11693 |
| MLOC | MLOC_55103.1 | 1322 | 2e-24 | 607 - 666 | 100 | 60 / 60 | minus | ABC09967 ABC11693 |
| JLOC1 | JLOC1_35522.4 | 1935 | 8e-25 | 1074 - 1133 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35522.3 | 900 | 8e-25 | 39 - 98 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC09966 | 1008 | 3e-25 | 946 - 1005 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC09967 | 1435 | 1e-23 | 600 - 659 | 98 | 59 / 60 | minus | ABC09967 |
| Harvest35 | U35_3926 | 1008 | 3e-25 | 946 - 1005 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_3927 | 986 | 1e-23 | 328 - 387 | 98 | 59 / 60 | plus |
Contig Sequence (1008 bp)
>U35_3926 1008 Hv_44K_v2 GCTCAAGTCTAGCAGAGCAGAGCATTCCCTCACTTACTTTGCTAGGCACGGCCATGTCCG CCGTCACCGAGCAGCTCCTCCTTCCCCATGAGCAGCACCGTCGACGTCCGGCACGGGTGC TTGCTGTCACCGTATCGGTCGCAGTGGTCCTGCTGCTGCTGCTGGTGGTGGTCCCTGCCA GCCTCCTCCGTCGTACGCTGCTCGGCGCGCCATCGACGGACCGCGTCGCGCTCACCCTCC TCGCTGGTGCGAAGGAGAAGGGCGCAGTGTGCCTGGACGGAACACCGCCGGGGTACCACC TGCAGAGGGGCTCCGGTGAGGGCGCCGACCGCTGGCTCGTCCATCTAGAGGGAGGAGGCT GGTGCAGCACAGTCAAGGAATGTTCCGACCGCAGACTGTCCAGCCAAGGTTCATCCAACT TCATGAGATCGATAAGGTTCATGGGCAATGGGATCCTCGGCGGTGATCAGCTGCAGAATC CTGATTTCTACAACTGGAACAAAGTCTACGTGCGGTACTGCGATGGCGCATCGTTTTCTG GCGACGCGGAAGCTCAAGCAGAGGATGGAACCACACTATACTTCAGAGGATTGCGTATCT ATGAAGCAGTTATCGACGAACTCATGGAAAAAGGACTCGCCAGTGCTACACAGGCCCTCT TTACAGGCTGCTCTGCTGGTGCTCTATCCATGATGCTGCATTGCGATGATTTCCGTGCAA GATTTCCTCAGGAGGTTTCAGTTAAATGCTTTGCGGATGCTGGGTTCTTCATTGATGAAA AGGATATATCCGGAAAAAGGTCCCTTTGGTCTCTGTACGATAGAGTCATTCACCTCCAGA ATGTTAGAAAAGTGTTGCCCAAGGACTGCCTTGCCAACAAGGAGCCAACCGAGTGTTTCT TCCCGGCAGAGCTTATTAAGAGCATCCGCACCCCAATGTTTATTCTCAACCCTAGTTATG ATTCATGGCAGATACGAAATGTTCTTGTACCTGATTCATCTGCTCCTG
Homology of Contig U35_3926 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g66850.1 | 403 | 4e-128 | protein|pectinacetylesterase domain containing protein, expressed |
| Brachypodium v1_2 | Bradi1g50397.1 | 389 | 2e-129 | |
| Arabidopsis v10 | AT3G09410.1 | 427 | 8e-101 | Pectinacetylesterase family protein | chr3:2898243-2900984 REVERSE LENGTH=427 |