barSeed - Barley Seed Development Database

Probe CUST_23091_PI390587928

Source Contig U35_3927

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23091_PI390587928	Hv_44K_v2	TTGTAATGACTTTGATCTTCCTGTTATTAACGATTAAGGTCTGCAAGTGAGAATGCGCCC	905	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55103.1	1322	2e-24	27 - 86	100	60 / 60	minus	ABC09967 ABC11693
MLOC	AK354002	1661	7e-23	1541 - 1600	98	59 / 60	plus	ABC09967 ABC11693
JLOC1	JLOC1_35522.4	1935	8e-25	1654 - 1713	100	60 / 60	plus
JLOC1	JLOC1_35522.3	900	8e-25	619 - 678	100	60 / 60	plus
Harvest21	ABC31984	475	3e-25	21 - 80	100	60 / 60	minus
Harvest21	ABC09967	1435	3e-25	22 - 81	100	60 / 60	minus	ABC09967
Harvest35	U35_3927	986	3e-25	906 - 965	100	60 / 60	plus

Contig Sequence (986 bp)

>U35_3927 986 Hv_44K_v2
CATCGTTTTCTGGCGACGCGGAAGCTCAAGCAGAGGATGGAACCACACTATACTTCAGAG
GATTGCGTATCCATGATGCTGCATTGCGATGATTTCCGTGCAAGATTTCCTCAGGAGGTT
TCAGTTAAATGCTTTGCGGATGCTGGGTTCTTCATTGATGAAAAGGATATATCCGGAAAA
AGGTCCCTTTGGTCTCTGTACGATAGAGTCTTCACCTCCAGAATGTTAGAAAAGTGTTGC
CCAAGGACTGCCTTGCCAACAAGGAGCCAACCGAGTGTTTCTTCCCGGCAGAGCTTATTA
AGAGCATCCGCACCCCAATGTTTATTCTCAACCCTAGTTATGATTCATGGCAGATACTAA
ATGTTCTTGTACCTGATTCATCTGCTCCTGACAAGTCATGGTTGAGTTGCAAGGAAAATA
TCCGAAACTGCAACTCTACACAAGTTGAAGTCCTCAATGGATTGAGGAATAAGATGGTCA
ATGACTTGAAGGTCGTCGAAGATAAGGAGGACTGGGGCATGTTCATCGACTCATGCTTCA
CGCACTGCCAATCCCTCTCCGGCATCTCTTGGCATTCGCCAACCTCCCCGAGGCTTGAAA
ATAAGACCATTGCAGAAGCTGTTGGAGACTGGCACTCTGGAAGGAGCCAAGGAGCGAAAG
AGATTGACTGCAAGTATCAGTGCAACCCAACATGCAATAGTTTACCGCCTCCACGAGATG
TTACTGCATTCGACCGTGTCGAGATCTACTAAGTAAAGGTTCAAGAAGGGGGGGGGGCAG
CAATCGTCATATTGTACTGGTCATCAAAGTGAAAATAATATTCATCATGCATGAAAATAA
TAATAATCAGGATCTTCAAGCTAAAAATTCTGGGACCCTGTTTCAGATAGTTTTGATGTG
GACATTTGTAATGACTTTGATCTTCCTGTTATTAACGATTAAGGTCTGCAAGTGAGAATG
CGCCCAATAAAAAAAAAAAAAAAAAA

Homology of Contig U35_3927 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g66830.1	414	5e-83	protein\|pectinacetylesterase domain containing protein, expressed
Brachypodium v1_2	Bradi2g62427.3	346	1e-100
Arabidopsis v10	AT3G09410.1	427	1e-60	Pectinacetylesterase family protein \| chr3:2898243-2900984 REVERSE LENGTH=427