barSeed - Barley Seed Development Database

Probe CUST_22985_PI390587928

Source Contig U35_27846

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22985_PI390587928	Hv_44K_v2	CGTTTTAAGCTACTATTTTACAAAGTATTGCAGAGACGGTGGGAATTTCTACTGGCTCTC	627	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58712.3	2478	2e-24	2126 - 2185	100	60 / 60	minus	ABC41710
MLOC	MLOC_58712.4	2388	2e-24	2035 - 2094	100	60 / 60	minus	ABC41710
MLOC	MLOC_58712.1	2203	2e-24	2112 - 2171	100	60 / 60	minus	ABC41710
MLOC	MLOC_58712.13	1079	2e-24	745 - 804	100	60 / 60	minus	None
MLOC	MLOC_58712.9	2179	2e-24	1826 - 1885	100	60 / 60	minus	ABC41710
MLOC	AK251535.1	2485	6e-24	661 - 719	100	59 / 59	plus	ABC41710
MLOC	MLOC_58712.10	2113	3e-21	1779 - 1838	97	58 / 60	minus	ABC12425
JLOC1	JLOC1_38164.2	3642	8e-25	295 - 354	100	60 / 60	plus
JLOC1	JLOC1_38164.1	1595	8e-25	292 - 351	100	60 / 60	plus
Harvest21	ABC41709	586	2e-22	529 - 583	100	55 / 55	plus
Harvest35	U35_27846	690	3e-25	628 - 687	100	60 / 60	plus

Contig Sequence (690 bp)

>U35_27846 690 Hv_44K_v2
AACTCGCCGGAGCGGCGGCGCCGGCCATCTCGCCTCGCCTACGCGGGAGAAGCGTCGAGC
GTACCGCTCGATTCCGTCGTGGGCTATCGAGAACCTCCGCCTGCCGCCTCGGCGGGGATG
GTGAAGATAGTGACGTACAACGTGAATGGGCTGCGGCCGCGGGTGGCGCAGCACGGCTCG
CTCCGCCGCCTCCTCGACTCGCTCGACGCCGACATCATCTGCTTCCAGGAGACCAAATTG
TCCAGGCAGGACTTGTCTGGGGATGTCATAATGGCTGAGGGATACGAGGCCTTCATTTCG
TGCAATCGTACGTTGAGAGGGCGCGGAGTGTACTCTGGTGTTGCAACGTTTTGCCGGGTG
TCATCAGCATTTGCCAGTCAGGATGTTGCTTTGCCAGTCGCAGCTGAAGAAGGCTTTTCT
GGATTACAGGGCTCTGCAAAAGACAATAAGATTATTGGGGATTTTGTTCTTGAAATGCCT
ATGGAAGAGGAAGATCTTGGCGAAATAACAAGAGAGGAGCTGCTCAGGGTGGACAGTGAG
GGGCGATGTATCATCACTGACCATGGACATTTTGTTCTTTTCAATATTTACGGCCCATCT
ATTGGAGAAGATGATGAAGAACGAGTACGTTTTAAGCTACTATTTTACAAAGTATTGCAG
AGACGGTGGGAATTTCTACTGGCTCTCGGA

Homology of Contig U35_27846 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36530.1	620	1e-101	protein\|endonuclease/exonuclease/phosphatase family protein, putative, expressed
Brachypodium v1_2	Bradi4g36380.1	625	7e-109
Arabidopsis v10	AT4G36050.2	610	7e-59	endonuclease/exonuclease/phosphatase family protein \| chr4:17052323-17055044 REVERSE LENGTH=610