barSeed - Barley Seed Development Database

Probe CUST_22971_PI390587928

Source Contig U35_15871

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22971_PI390587928	Hv_44K_v2	GTGCAGAATTCAGTCAAGGTGATCGTGCAGTCATGTCTCTGACTTTTCTGATACTCTAAA	1430	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.083	0.170	0.711	1.673	1.477	1.904
Raw	755.337	2415.510	8912.430	32017.400	10166.497	14205.260

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_43213.1	1556	4e-23	1264 - 1320	100	57 / 57	plus
Harvest21	ABC04150	1504	3e-25	1431 - 1490	100	60 / 60	plus	ABC04150
Harvest35	U35_15871	1504	3e-25	1431 - 1490	100	60 / 60	plus

Contig Sequence (1504 bp)

>U35_15871 1504 Hv_44K_v2
GCCACGGGGTATCTCCGCTCCGCTCCATGTGAACGAGCGAACAGACGAACGATTGGACGG
AGCCAAGCAGTCCACTCCCACTCCACCTCCACCCCCAACCCGAGGCGACAAGATCCCGTC
CCCGGCGGCGGATCACGCCGCGCGCGCGCTTGCCTGCCTGCGTGAGGAGAGAAGAAAAAG
GAAGGATAAAAAGATGCGCGTCGGTTGTACTCCCTTTTTCTTCTCCTCACGCAGGAGCAC
TAGTTAGGTAGGAGATCGAGGTCTCGCCCCGCCCCCGCGCACTAAAGGCCACCGCTGCCG
CTGGGTTTCCGAGTTTGGACCGGCGCGGCGGTGGGTGGTGCCGTGCTGGCGGCGCCCTCC
CAACCTACTATCTGGCAACACCCAGACCCACCGCGTGATCCATTGCAGCGATATTCGGGC
CGCGAGGAGCAGGAGGAGGGACGAGTCCGCACTCGGCACTCTGCAGGGAGGGCGGGAGGG
CGAGACCGCGAGAAGGGGGAATCATGAGCGGAACAGGGTACACTGTGGAAGTCACTAACC
TGTCAAGCAGCGCGTCTGAAAATGATCTTCATGAGTTCTTCTCATTCTCTGGACCTATTG
AGCATATAGACCTTATCAGATCAGGAGGATATGGTTCAACTGCTTATGTGACTTTCAAGG
AACCCTATGCCTTGGAAACTGCAGTATTGTTGAGTGGGGCTACCATTGTGGATCAGCCGG
TGTGCATATCTCGTTGGGGACAGCCTGATGAGCCTAGTAATTTCTGGGACAGGCCAACTT
GGCAGGTCGAGGAGGAAATTGAATATAGGGACTACCAATCATGCCAGTTCAACGCCACTC
CACAGGAGGCTTTGACAGTGGCTCAGGACGTCGTGAAGACGATGCTGTCGAGGGGATACA
TACTGAGCAAGGACGCATTGTCCAGGGCTAGAGCTTTCGACGAGTCCCACCAGTTATCTG
GATCTGCGGCAGCAAAGGCTGCAGAGCTGAGCAGGAGGCTCGGCCTGACTGACAGAGTCA
GTGCTGGTGTTGGCGCAATCAGATCAGTGGACGAGACATACCATGTTACCGAGACGACCA
AGACCGTCGCCACTGCCACCGGAAGAACCGCGGTCAAGGTTATGAACACCATCGTGACGA
GCAGCTATTTCTCCGCAGGAGCTATGATGCTGTCCGAGGCTCTCACCCGCGCCGCCAAGG
CCGCTGAAAATCTGGCTGCTCATGGCAGGCAGAATTAAGTGGAAATAAACACCCCGTTCG
AACAGTTTGTTGTGTCGGTTATACAAAAGTCGGTTATTCAGACACCATGGTCGAACTTAA
GGTATGATATATTTATGTGCTATCTATGATACAGTATATAATAACAGTATTGTGGTAGCT
AGAGCAAACTGTCAGTTATTCAGACAACAAATGTGGTTTGAACAAGCTATGTGCAGAATT
CAGTCAAGGTGATCGTGCAGTCATGTCTCTGACTTTTCTGATACTCTAAAAAAAAAAAAA
AAAA

Homology of Contig U35_15871 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g54870.1	257	7e-125	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi5g23570.1	245	3e-140
Arabidopsis v10	AT1G14340.1	244	2e-66	RNA-binding (RRM/RBD/RNP motifs) family protein \| chr1:4897709-4898776 FORWARD LENGTH=244