barSeed - Barley Seed Development Database

Probe CUST_22970_PI390587928

Source Contig U35_15872

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22970_PI390587928	Hv_44K_v2	CCAGTATTTGTACGGAAAATCATGATCTCATCTTGGGTTCATGTGGAAAATTCATGTCTG	920	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.595	2.132	1.274	1.006	0.706	0.628
Raw	35.643	35.568	17.423	22.102	2.878	3.489

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_39958.1	1295	8e-25	1219 - 1278	100	60 / 60	plus
Harvest21	ABC04275	1014	3e-25	905 - 964	100	60 / 60	plus	ABC04275
Harvest35	U35_15872	1030	3e-25	921 - 980	100	60 / 60	plus

Contig Sequence (1030 bp)

>U35_15872 1030 Hv_44K_v2
CCAAAGCAACCAGTCCTCACCCCAACCAGGCCGGCGAGGGCGAGCCGTCGTCGGAGCCGA
AGCCGGAGAGCGCGATGGGGAACGCGTCGTCGATGCTGACGCAGTACGACATCGAGGAGG
TGCAGGAGCACTGCAGCTACCTATTCTCGCAGCAGGAGATCGTGTCGCTGTACGAGCGAT
TCTGCCAGCTCGACCGCAGCGCCAAGGGGTTCGTCTCCGAGGACGAGTTCCTCTCCATCC
CCGAGTTCTCCACCAACCCGCTCTCCCAGAGGTTGCTACGCATGGTTGATGGATTGAACT
TCAAGGAATTTGTTTCTTTTCTCTCTACCTTCAGCGCAAGGGCCAGCCTTCAGCAAAAGA
TTGAGTTGATATTTAAGGTGTATGACGTTGATGGCAAGGGGAAAGTATCCTTCAAGGACC
TGGTAGAGGTTTTGCGGGATCTAACTGGCTCATCCATGTCAGAGAAACAAAGAGAGCAAG
TACTAACAAAGGTGTTGGAAGAAGCCGGATACACACAGGATTCCACCCTAGCAATAGAAG
ATTTTGTGACGATCATCGACCACCCCGGCCTGAAGATGGAGGTGGAAGTGCCCATCGACT
AAGTGAACGGCGAATGTGGATTTCAGCAGAGATGAGGATGCAAGGAGCCCTCTCTGTCTT
CTGGAAACAAACAAGTGTCCATAGCCAATAGATTGTGTGACAGAATAGAATGGGAGCTCA
CTGTTTTGAGCTCTTCTGTACCTGTCCGCATACATGCCTGAATCTTACGTTTAGAGTCAT
ATATTTTTTTCTGTTTTGAGGGGATTGATTAATGCAGTGTCAATGTAGAGTGATTCTTGT
TACAGTTTCCAGACCATGAAAACGTTCCAAACTTAAAAAAAAAAAAAAAAAATTTCAGCT
GTCGACTACACCATAGGAGGCCAGTATTTGTACGGAAAATCATGATCTCATCTTGGGTTC
ATGTGGAAAATTCATGTCTGAATTTAAAATCTGTGAGAAAAAAAAAAAAANNNAAAAAAA
AAAAAAAAAA

Homology of Contig U35_15872 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g55880.1	176	5e-105	protein\|EF hand family protein, putative, expressed
Brachypodium v1_2	Bradi3g54380.1	176	2e-113
Arabidopsis v10	AT3G18430.1	175	2e-85	Calcium-binding EF-hand family protein \| chr3:6326180-6327476 FORWARD LENGTH=175