barSeed - Barley Seed Development Database

Probe CUST_22969_PI390587928

Source Contig U35_15873

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22969_PI390587928	Hv_44K_v2	TGCCCGAATGCATGCAGTGCCAGTTTAATCATTTTTTCTTCTGTTTTTGAGAGGATTAAT	763	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249781.1	922	2e-24	797 - 856	100	60 / 60	plus	ABC04275 ABC04276 ABC37649
MLOC	MLOC_15489.1	459	2e-24	377 - 436	100	60 / 60	plus	ABC04275 ABC04276 ABC37649
JLOC1	JLOC1_10625.1	1116	8e-25	793 - 852	100	60 / 60	plus
Harvest21	ABC04276	907	3e-25	764 - 823	100	60 / 60	plus	ABC04276
Harvest35	U35_15873	912	3e-25	764 - 823	100	60 / 60	plus

Contig Sequence (912 bp)

>U35_15873 912 Hv_44K_v2
GCACCCCTCGACTGACGCAGCGAGGGAGAGAGGGGAGGGCCAGTCGTCGGAGGAGCAGAT
CGACGGGGGAGGCTTCCCGGCGATACGATGGGGAACGCGTCGTCGATGCTGACGCAGTAC
GACATTGAGGAGGTGCAGGAGCACTGCAGCTACCTATTCTCGCAGCAGGAGATCGTGTCG
CTGTACGAGCGATTCTGCCAGCTCGACCGCAGCGCCAAGGGCTTCGTCGCCGAGGACGAG
TTCCTCTCCATCCCGGAGTACTCCACCAACCCGCTCTCCCAGAGGTTGCTACGTATGGTT
GATGGATTGAACTTCAAGGAATTTGTTTCGTTTCTCTCTACCTTCAGCACAAGGGCCAGC
TTTCAGCAAAAGATTGAGTTGATGTTTAAGGTGTATGACATTGATGGCAAGGGGAAAGTA
AGCTTCAAGGACCTGGTAGAGGTTTTACGGGACCTAACGGGCTCATCCATGTCAGAGCAA
CAAAGAGAGCAAGTACTAACAAAGGTGTTGGAAGAAGCTGGGTACACACGGGATTCCACT
CTATCATTAGAAGATTTTGTGACGATCATCGACCACCCTGGCCTGAAAATGGAGGTGGAA
GTGCCCATCGACTAGTGAAGGGAGAATGCAGATTTCAGCAGATGAGGATGCAGCAAGCTC
TCAGTCATGTCTGATGAAAACAAGTGTCCATAGCCAGTAGAACGTGCGACAGAATGGAAT
GGGAGCTCATTGTTTTGAGTTCTTGTGTACCTGTCCACATGCATGCCCGAATGCATGCAG
TGCCAGTTTAATCATTTTTTCTTCTGTTTTTGAGAGGATTAATTAATGCAGTGTCGATGT
AGAGTGGATCTTGTTACAGTTTCCAGACTTTGAAAAACGTTCTAAAACCTAAAAAAAAAA
AAAAAAAAAAAA

Homology of Contig U35_15873 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g55880.1	176	5e-105	protein\|EF hand family protein, putative, expressed
Brachypodium v1_2	Bradi3g54380.1	176	8e-112
Arabidopsis v10	AT3G18430.1	175	8e-84	Calcium-binding EF-hand family protein \| chr3:6326180-6327476 FORWARD LENGTH=175