barSeed - Barley Seed Development Database

Probe CUST_22956_PI390587928

Source Contig U35_27859

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22956_PI390587928	Hv_44K_v2	GCTCAAGAACTATGTGCCATTCAAGACGAAGCTGTGAATAAATATGTTACTTGAGAATAA	481	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55054.1	1706	2e-24	150 - 209	100	60 / 60	minus	ABC14547 ABC26356
JLOC1	JLOC1_35483.1	1776	8e-25	1498 - 1557	100	60 / 60	plus
Harvest21	ABC26356	580	3e-25	482 - 541	100	60 / 60	plus	ABC26356
Harvest35	U35_27859	580	3e-25	482 - 541	100	60 / 60	plus

Contig Sequence (580 bp)

>U35_27859 580 Hv_44K_v2
CGGGGAACATGCTCACCGGGTTCGGCTTCTACGAGCCCTTCTGGCTCATCGACTTCGCCA
ACATNTGCATCGTCGTGCACCTCATCGGTGCCTACCAGGTGTACTGCCAGCCCATATACG
CCGCCGTGGAGAGCTGGGATGCGGCACGGTGGCCGAGCTCAGAATTCGTCGTCCGCCGGT
ACCATCCTTTCGCCGCCGGCAAGTTCAGCGTCAACATGTTCAAGCTGGTGTGGAGAACGG
CGTTCGTCGTCGTAAGCACGGTCCTTGCCATCTCGTTGCCCTTCTTCAACGTCATCCTTG
GCCTCCTCGGCGCGCTCAGCTTCTGGCCGCTCACCGTGTACTTCCCAGTGGAGATGTACA
AACGACAGAGCAAAGTGGAGAGGTTTTCCAAGAAGTGGGTGGTGCTGCAGAGCCTGAGCT
TCATGTGCTTTGCGGTGACGGTGGCGGTGACCGTTGCCTCCGTGCAGGGGATCACCCAGT
CGCTCAAGAACTATGTGCCATTCAAGACGAAGCTGTGAATAAATATGTTACTTGAGAATA
AATTCACCAACTTATGTTTGCGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_27859 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g36180.1	488	3e-78	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi1g45180.1	489	1e-92
Arabidopsis v10	AT5G49630.1	481	7e-64	\| Symbols: AAP6 \| amino acid permease 6 \| chr5:20142681-20146441 REVERSE LENGTH=481