barSeed - Barley Seed Development Database

Probe CUST_22949_PI390587928

Source Contig U35_39836

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22949_PI390587928	Hv_44K_v2	CCGGGTTATTGTCTTGCGTCATCTTGGGTGTGAGTGTTGGTTTATATAAAGCTATGGAAA	540	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20557.1	1299	2e-24	999 - 1058	100	60 / 60	plus	ABC06409 ABC18311 ABC23137 ABC36062
JLOC1	JLOC1_14248.1	1299	8e-25	999 - 1058	100	60 / 60	plus
Harvest21	ABC36062	635	3e-25	541 - 600	100	60 / 60	plus	ABC36062
Harvest35	U35_39836	635	3e-25	541 - 600	100	60 / 60	plus

Contig Sequence (635 bp)

>U35_39836 635 Hv_44K_v2
GCCTCGTGCCGGTGCAACAGCGTGGTTTGGGAGTGTATCCAACCAGCTGCCCGCTACACC
GATGGGCCGTGGACCTCGTCCATCAGCAGGTATCCGGTGGACATTCCCGACGTGCTAAAA
TAAGTCAAGATTCATAAAGTTTGACCAAGTTTAGGAAGAAAATCATCCATATCTACCATA
TACCAAATACATACCATATGAAATGAAAATATATAGCATGAATCTAGTAATGGTAGTATA
TATAGATGTGGATAATTTGTTTAATAATCTTGGTCAAACGATACAAAGTTTGAATTAAAA
TTTTCTAATACGCACTCTATTTCGGGATGGTAGGAGTACTACGTACATAATCAGTGGAAA
GCCCCACAATGTCTCATAAACATTAATATCACATGAGATGTCGTGAAAATCAAGCAATTG
TGTAGCTTGTTCCAGGACGATGTTAATCAAGCACAACATGTGGGCTAAGCTTGGTCATTA
AGTTTGTAATGTGATCATCCGTCTATAAGGTGGTCGTGTGAAGGTTTTGTAAATCAAGAT
CCGGGTTATTGTCTTGCGTCATCTTGGGTGTGAGTGTTGGTTTATATAAAGCTATGGAAA
AAAAAAACTTGAAAAGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_39836 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None