barSeed - Barley Seed Development Database

Probe CUST_22886_PI390587928

Source Contig U35_25266

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22886_PI390587928	Hv_44K_v2	TTGACAAGATACTCCATACCTGTTTGTACATCACAGCTGACTAGTTCAGGTACACTTAGC	1078	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10712.4	3324	7e-23	3135 - 3195	98	60 / 61	plus	ABC21581
MLOC	MLOC_10712.5	2638	7e-23	2393 - 2453	98	60 / 61	plus	ABC21581
MLOC	MLOC_10712.1	2757	7e-23	2408 - 2468	98	60 / 61	plus	ABC21581
Harvest21	ABC21581	1138	3e-25	1 - 60	100	60 / 60	minus	ABC21581
Harvest35	U35_25266	1138	3e-25	1079 - 1138	100	60 / 60	plus

Contig Sequence (1138 bp)

>U35_25266 1138 Hv_44K_v2
TGTTGGGGACAATGTTCCATCAAAAGACCAGTATGATACCTGCGATGATGCTAAGGATGA
ATGCAGGAGATATGCTGCTGTTCAAACGATTCTACGCGTGGTCCTAGCATGGTTGACTGC
TGTGATATTCTATTCTGGTATGCTTTTGTTTCCAGTCTCAGTAGGTCGTGCATTGCTGAT
TGCCATCCCTCAGCTGCCAGTAGCAGGTGGATTGAAGTCCAATGACCTGTTTGCTGTTGC
TGTTGGATTTTGCATCATATCAACTATCATTGCCGCCCTTAGAGATTTATCTGCCTGCAT
GACTTCTGGGAGAACATGCCTTCTAGCTTTGAAGAGGGATCTGCTTTTCTTCATATGGAT
GGTCATCATTCCTCTCTTGATTGGTTTGCTGGCTGATTTATTACTGATATCACCCTTCGT
TGGGACTGATTTTCCAGCTCTAAACTTTTTCCGCACTTGGCTCCTGNGCCGGTTCTTTAA
GCTCTTATGGATTAACCACGTCGATGAAAGTTGGGAGGCGAAGTTTAAGCGGGCAAATGA
AGATTGTTCTGGAGAGCTCAGAGCAATGTGGTGGTTCTTTCAAGATGTGTGCATTCCTGT
CGCCATGAAGCTACTCGTTGCTCTGGCTGTTCCTTATGTTCTCGCCAAGGGCGTCTTCCC
AAGATTGGGCTACTCTGCCTCCCTGAACTCGACAGTCTACCGTTTCTCATGGTTGGGCAG
CCTTGGCATTTGCGCCTTCTACTGTCTTGGCAAGGTGTTATGCGTGCAACTCCATGATTC
TATCAGGGACGACCGCTATGCCATTGGGCGGACGTTGGAAGACGTTGGAGACGGGAGCTG
AATACTCTTTTCTGAGGGCTTTTTTGTAGCAGCTAGTTCACCTCAGACAGGGATAGGATG
AGTAATATCAACAAATCCTTGTGCAGACGGGAAGGAATATACGGGTCACATTACTGATAG
GATGGATGCAAATGAGATGGTTCCAAACAGATAAATTTCCAGCGGAACTTGGTACATATG
GGAATGGTTTTCCGTGTGGAGGGCATTTGCTGAATTCAGCATTTGTGAACATGTAAACTT
GACAAGATACTCCATACCTGTTTGTACATCACAGCTGACTAGTTCAGGTACACTTAGC

Homology of Contig U35_25266 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g12860.1	903	9e-63
Arabidopsis v10	None