barSeed - Barley Seed Development Database

Probe CUST_22855_PI390587928

Source Contig U35_25278

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22855_PI390587928	Hv_44K_v2	TTAGTGAAAGCAAGGGAACATCAACACGAGCATCATCAACAACAGCAATCTCAGCAGCAA	637	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK377138	3254	2e-24	492 - 551	100	60 / 60	plus	ABC15448 ABC22799
JLOC1	JLOC1_1014.1	323	8e-25	237 - 296	100	60 / 60	plus
Harvest21	ABC27595	564	3e-25	301 - 360	100	60 / 60	plus
Harvest35	U35_25278	901	3e-25	638 - 697	100	60 / 60	plus

Contig Sequence (901 bp)

>U35_25278 901 Hv_44K_v2
TCGAGCACTGTTGGCCTATTTTTTCGGTTTTCCTCTCCACTCCTCCCCCACCTCTCTCTG
CTACGCCTACGCTCCACTCTCTCCTCCCGTCCCGCCGTTCCAGACGCATCCGACCTTCTC
CTCTCGCCTCCCCCCACCCAGCCACCCCTGAGGTCTCGCCCTTGCTGCGGGGAGAGATAC
GCGCGCCCACCGTCCCCGGCGGCTGCGGGGAGCTAGCGCGTCACTGCCCGCGCCCACTAC
CTAGGTCGCCCTAGAGGCGGAGGCGGCGGAGTGGCTTGTCGGGGGGAAAGACCATCCTGG
CCGGGCTCCTTTTCCGTGGGCACCTCCGGATTTCCTAGGTTGTGGCGCCGGGAGCGGAGC
CATGTCGCAGTCTCAATCTCAGTCTCAGTCTCAGTCGCAGACCAACTGGGAGGCGGATAA
GATGTTGGATGTCTACATATATGACTATTTTGTGAAGAGAAATCTGCAGGAAACTGCAAA
AGCCTTCCAAACGGAAGGGAAGGTTTCACCAGATCCAGTTGCAATTGATGCTCCTGGTGG
CTTCCTTTTTGAATGGTGGTCGGTATTTTGGGATATATTCATAGCAAGAACAAATGAGAA
GCATTCAGATATTGCAGCATCATATATTCAGACTCAGTTAGTGAAAGCAAGGGAACATCA
ACACGAGCATCATCAACAACAGCAATCTCAGCAGCAATCTCAGCAGCAGCAGCAACAACA
ACAGCAACAGCAGCAACAACAGCAACAGCAGCAACAGCAACAGCAACAGCAGCAACAACA
ACAGCAACAGCAACAGCAGCAACAACAATCTCAGCAGCAGCAACAATCTCAACAGCATCA
ACAAATACAGATGCAGCANATGTTGTTACAGAGAGCTGCACAGCAGCAGCAGCAGCAGCG
T

Homology of Contig U35_25278 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None