barSeed - Barley Seed Development Database

Probe CUST_2283_PI390587928

Source Contig U35_2941

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2283_PI390587928	Hv_44K_v2	ACCGATGTCTTGTGCTGGAATTTCTAACCTTGTACCATTGTTTTGTTTTCCTTTTTGTGC	1384	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.489	2.745	1.150	0.821	0.322	0.376
Raw	141.414	251.180	89.911	100.625	14.401	17.695

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_12699.1	791	8e-25	222 - 281	100	60 / 60	minus
Harvest21	ABC06518	1475	3e-25	1385 - 1444	100	60 / 60	plus	ABC06518
Harvest35	U35_2941	1475	3e-25	1385 - 1444	100	60 / 60	plus

Contig Sequence (1475 bp)

>U35_2941 1475 Hv_44K_v2
CCCCCGGGCCTGCAGGCACCAACGCCCGCTTCACCGGAACCGTACCCCCACCCAACCGCA
TGGCCGCGGCGCTCGCCTCCTCCCGCTGCTGCCGCCGCCCTTCGCTTCTTAACAGTGATC
GTCGCCGCCGCTCCGTCGTCCGGTGCGCGCTCTCCGGCGAGAAAGGAAACTCATTTAGCT
GGAACAAATGTGCAATTTCTATAGCATTGTCTGTTGGATTAATTACTTGCCCACCAACAT
TTGGATGGTCGGCCCATGCTTTTCCGCTCGAACCTGTAATCCCTGATATTTCAGTTCTGA
TTTCTGGACCTCCCATTAAAGATCCAGGGGCTTTGTTGAGATATGCTTTGCCCATAGATA
ATAAAGCTATTCGTGAAGTTCAAAAACCGTTAGAGGATATCACCGATAGTCTCAAAGTTT
CTGGTGTTAGAGCGTTGGATTCAGTTGAAAGAAATGTGAGGCAGGCCTCGAGAGCGCTGA
CTAATGGGAGGAGTTTAATACTTACTGGTCTTGCTGAATCAAAAAGAGAAAATGGAGAAA
AAATATTGGATAAATTAGCTGTTGGACTTGAAGAGCTTCAACGAATTATTGAGGATAGAA
ACAGGAATGCGGTAGCTCCAAAGCAGAAAGAGCTTCTCAATTATGTTGGAATTGTAGAAG
AAGATATGGTCGATGGCTTCCCCTATGAAGTACCAGAAGAATACAACAATATGCCTCTTC
TTAAAGGAAGAGCTACTGTGGATATGACGGTTAAGATTAAAGATAATCCAAACGTAGAAG
ATTGTGTATTTCGGATAGTTCTGGATGGATATAATGCTCCTGTGACTTCTGGGAACTTCG
TAGATCTGGTGGAACGGAAGTTCTATGATGGCATGGAAATCCAAAGAGCTGATGGTTTTG
TTGTTCAGACGGGAGATCCTGAGGGGCCAGCCGACGGTTTTATTGATCCCAGTACTGGCA
AGAGTCGTACCATACCTCTTGAGATAATGGTTGATGGTGACAAGGCGCCTATATACGGTG
AAACACTTGAGGAACTTGGCCTTTACAAGGCTCAAACAAAGCTTCCTTTTAATGCATTTG
GAACGATGGCAATGGCTAGAGAAGAATTTGATGACAACTCCGCTTCTAGTCAAGTCTTCT
GGCTCTTGAAAGAAAGTGAGTTGACGCCAAGTAATTCCAATATATTGGATGGGCGGTATT
CGGTGTTTGGATACGTAACCGAGAATGAGGATTTCTTGGCTGATCTCAAGGTGGGGGACG
TTATTGAATCAATCCAGGTTGTCTCAGGCCTAGACAATCTTGTCAACCCGAGCTACAAGA
TTGTAGGGTAGCATGTTTCCGTATATAAGAATTCCTTGACATGCAATTATTTTACGGTAT
TAAAACCGATGTCTTGTGCTGGAATTTCTAACCTTGTACCATTGTTTTGTTTTCCTTTTT
GTGCTTACATATACTCCCTCCGATCCTAAATATAG

Homology of Contig U35_2941 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g29370.1	428	protein\|peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g34940.1	424
Arabidopsis v10	AT3G01480.1	437	\| Symbols: CYP38, ATCYP38 \| cyclophilin 38 \| chr3:188569-190674 FORWARD LENGTH=437