barSeed - Barley Seed Development Database

Probe ABC06518

Source Contig ABC06518

barSeed

Links

Affymetrix Source Sequence (1475 bp)

>ABC06518 1475
CCCCCGGGCCTGCAGGCACCAACGCCCGCTTCACCGGAACCGTACCCCCACCCAACCGCA
TGGCCGCGGCGCTCGCCTCCTCCCGCTGCTGCCGCCGCCCTTCGCTTCTTAACAGTGATC
GTCGCCGCCGCTCCGTCGTCCGGTGCGCGCTCTCCGGCGAGAAAGGAAACTCATTTAGCT
GGAACAAATGTGCAATTTCTATAGCATTGTCTGTTGGATTAATTACTTGCCCACCAACAT
TTGGATGGTCGGCCCATGCTTTTCCGCTCGAACCTGTAATCCCTGATATTTCAGTTCTGA
TTTCTGGACCTCCCATTAAAGATCCAGGGGCTTTGTTGAGATATGCTTTGCCCATAGATA
ATAAAGCTATTCGTGAAGTTCAAAAACCGTTAGAGGATATCACCGATAGTCTCAAAGTTT
CTGGTGTTAGAGCGTTGGATTCAGTTGAAAGAAATGTGAGGCAGGCCTCGAGAGCGCTGA
CTAATGGGAGGAGTTTAATACTTACTGGTCTTGCTGAATCAAAAAGAGAAAATGGAGAAA
AAATATTGGATAAATTAGCTGTTGGACTTGAAGAGCTTCAACGAATTATTGAGGATAGAA
ACAGGAATGCGGTAGCTCCAAAGCAGAAAGAGCTTCTCAATTATGTTGGAATTGTAGAAG
AAGATATGGTCGATGGCTTCCCCTATGAAGTACCAGAAGAATACAACAATATGCCTCTTC
TTAAAGGAAGAGCTACTGTGGATATGACGGTTAAGATTAAAGATAATCCAAACGTAGAAG
ATTGTGTATTTCGGATAGTTCTGGATGGATATAATGCTCCTGTGACTTCTGGGAACTTCG
TAGATCTGGTGGAACGGAAGTTCTATGATGGCATGGAAATCCAAAGAGCTGATGGTTTTG
TTGTTCAGACGGGAGATCCTGAGGGGCCAGCCGACGGTTTTATTGATCCCAGTACTGGCA
AGAGTCGTACCATACCTCTTGAGATAATGGTTGATGGTGACAAGGCGCCTATATACGGTG
AAACACTTGAGGAACTTGGCCTTTACAAGGCTCAAACAAAGCTTCCTTTTAATGCATTTG
GAACGATGGCAATGGCTAGAGAAGAATTTGATGACAACTCCGCTTCTAGTCAAGTCTTCT
GGCTCTTGAAAGAAAGTGAGTTGACGCCAAGTAATTCCAATATATTGGATGGGCGGTATT
CGGTGTTTGGATACGTAACCGAGAATGAGGATTTCTTGGCTGATCTCAAGGTGGGGGACG
TTATTGAATCAATCCAGGTTGTCTCAGGCCTAGACAATCTTGTCAACCCGAGCTACAAGA
TTGTAGGGTAGCATGTTTCCGTATATAAGAATTCCTTGACATGCAATTATTTTACGGTAT
TAAAACCGATGTCTTGTGCTGGAATTTCTAACCTTGTACCATTGTTTTGTTTTCCTTTTT
GTGCTTACATATACTCCCTCCGATCCTAAATATAG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_15227.4	1204	0.0	110 - 1197	100	1088 / 1088	None	ABC06518
MLOC_15227.2	1740	0.0	150 - 1237	100	1088 / 1088	None	ABC06518
MLOC_15227.8	1170	0.0	83 - 1169	100	1087 / 1087	None	ABC06518
MLOC_15227.6	1535	0.0	779 - 1238	99	458 / 460	None	ABC06518
MLOC_15227.7	1532	0.0	779 - 1229	100	451 / 451	None	ABC06518
MLOC_15227.5	1237	0.0	779 - 1230	100	452 / 452	None	ABC06518
MLOC_15227.3	1773	0.0	819 - 1270	100	452 / 452	None	ABC06518
MLOC_15227.9	1220	9e-101	555 - 754	100	200 / 200	None	ABC06518
MLOC_18349.1	562	1e-174	1 - 333	100	333 / 333	None	ABC06518
MLOC_15227.1	1111	3e-70	219 - 363	100	145 / 145	None	ABC06518