barSeed - Barley Seed Development Database

Probe CUST_22770_PI390587928

Source Contig U35_15114

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22770_PI390587928	Hv_44K_v2	CCTGTTACGTTCCATAACTTTATTTGAACCGCTTTAACAAGATATCGAAGTCATTCGTAA	940	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250196.1	992	2e-24	893 - 952	100	60 / 60	plus	ABC02851 ABC02852
JLOC1	JLOC1_32531.1	612	8e-25	317 - 376	100	60 / 60	plus
Harvest21	ABC02851	1048	3e-25	931 - 990	100	60 / 60	plus	ABC02851
Harvest35	U35_15114	1055	3e-25	941 - 1000	100	60 / 60	plus

Contig Sequence (1055 bp)

>U35_15114 1055 Hv_44K_v2
CTACTGGACCCGAAACACCACTTCTCCCTCCCCCAAAGCCGCCGAGCACACAATCGAGCA
ACCCAGCCAAGGCACCACCACCTCCGCCGCCGGGAAGCCCAAACCAAACCCTAAGCCTCA
CCGACCGGCCGCCGGCGATGGCCCGCTACGACCGCGCGATCACGGTCTTCTCCCCCGACG
GCCACCTCTTCCAGGTCGAGTACGCCCTCGAGGCCGTCCGCAAGGGCAACGCCGCCGTCG
GCGTCCGCGGCACCGACACCGTCGTCCTCGGCGTCGAGAAGAAGTCCACCCCCAAGCTCC
AGGACTCCAGGTCCGTGCGGAAGATCGCGAGCCTGGACACGCACGTCGCGCTGGCGTGCG
CGGGGCTCAAGGCGGACGCGCGGGTGCTCATCAACCGCGCGCGCGTCGAGTGCCAGAGCC
ACCGCCTCACCGTCGAGGACCCCGTCACCGTCGAGTACATCACCCGCTACATCGCCGGCC
TGCAGCAGAAGTACACCCAGAGCGGCGGAGTCCGCCCCTTCGGCCTCTCCACCCTCATCG
TCGGCTTCGATCCGTACACGGACAAGCCCGCCCTGTACCAGACCGACCCCTCCGGCACCT
TCTCCGCCTGGAAGGCCAACGCCACGGGGAGGAACTCCAACTCCATGAGGGAGTTCCTGG
AGAAGAACTACAAGGACACCTCCGGCAAGGAGACCATCAAGCTCACCATCCGAGCCCTTC
TAGAGGTTGTTGAGAGTGGCGGGAAGAACATCGAGATCGCAGTGATGACAAAGAAGGATG
GCCTTCGGCAACTTGAGGAGACTGAAATCGATGAATATGTTGCGGAGATTGAGGCAGAGA
AGGCCGCGGCAGAGGCGGCAAAGAAGAGTGGCCCGAAGGACACCTAATTACTGGATGTGC
TATATCTTCATTCTGTCAGCCGAAACCTTTTAGCGTGTCACCTGTTACGTTCCATAACTT
TATTTGAACCGCTTTAACAAGATATCGAAGTCATTCGTAAATGAATTGCCTTGTTTTCTT
GAAAAAAAAAAAAAAAAATATAAAAAAAAATAAAA

Homology of Contig U35_15114 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36710.1	250	4e-154	protein\|peptidase, T1 family, putative, expressed
Brachypodium v1_2	Bradi4g36440.1	250	3e-161
Arabidopsis v10	AT5G66140.1	250	1e-141	\| Symbols: PAD2 \| proteasome alpha subunit D2 \| chr5:26437445-26438677 REVERSE LENGTH=250