barSeed - Barley Seed Development Database

Probe CUST_22764_PI390587928

Source Contig U35_15121

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22764_PI390587928	Hv_44K_v2	TTGATGAAATCCTCAACCCACGATGATAATAATCAGCAGCCTTCTGGTTTGGTTAAAAAA	481	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5186.2	1411	3e-21	1078 - 1131	100	54 / 54	plus	ABC02541
JLOC1	JLOC1_3321.2	838	2e-21	607 - 660	100	54 / 54	plus
JLOC1	JLOC1_3321.1	939	2e-21	708 - 761	100	54 / 54	plus
Harvest21	ABC02541	2653	1e-23	2582 - 2642	98	60 / 61	plus	ABC02541
Harvest35	U35_15121	552	3e-25	482 - 541	100	60 / 60	plus

Contig Sequence (552 bp)

>U35_15121 552 Hv_44K_v2
CGGCTACAACCCAATCCGCGTCAAGGGAATCAAGCAGAGAGAATCCCCAAGAAGAAGAAG
AAGAAGAAGAAGAGAGTCGCCGGCGGCGGAAGGCAGCAAGAAGATGACTCGGGGCAACCA
GAGGGACCGCGACCGCGAGCGCGCGGCGGCGCGGAAGCCCAACTCCAAGAACGGCGGCGA
CGGCCTCACCCCGGAGCAGCGCCGCGAGAGGGACAAGAAGGCGCTCGAGGAGAAGAACGC
CAAGAAGGCGGCGCAGGCCTCCGGGAGCACCTCCACGGACGCCAAGACCAAGGACGGCAA
GAAGTAGTAGTAGGAGAGGCGTCGCCGCCACCACCGGGATGCCGGCGCCGCCTCTTCGCG
ACTACCATAAAGTTTGTACCCTTATTGTTTGCAGCATCTGCTGATCTTTGTGCCTTAATC
GTGTATGGTTGGTTAAAACTGTCGTTAGCTGCAGTCTTTGTTGCCATATGAGTCTGTACT
CTTGATGAAATCCTCAACCCACGATGATAATAATCAGCAGCCTTCTGGTTTGGTTAAAAA
AAAAAAAAAAAA

Homology of Contig U35_15121 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None