barSeed - Barley Seed Development Database

Probe CUST_22744_PI390587928

Source Contig U35_15134

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22744_PI390587928	Hv_44K_v2	AGCCTGCATGGCAGTGCTCTTCCGATAAATTATATCATTTCGTCATTTAAGCTGCAGAAA	609	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51591.1	3346	2e-24	622 - 681	100	60 / 60	minus	ABC03349 ABC03350 ABC49926
MLOC	MLOC_51591.2	1513	2e-24	279 - 338	100	60 / 60	minus	ABC03349 ABC03350 ABC49926
JLOC1	JLOC1_32971.1	1686	8e-25	1310 - 1369	100	60 / 60	plus
Harvest21	ABC03349	1209	3e-25	1142 - 1201	100	60 / 60	plus	ABC03349
Harvest35	U35_15136	1288	3e-25	1147 - 1206	100	60 / 60	plus
Harvest35	U35_15134	683	3e-25	610 - 669	100	60 / 60	plus

Contig Sequence (683 bp)

>U35_15134 683 Hv_44K_v2
CGGCGACTTCCGCAAGCTTTTGGTGCCTCTTGTAAGCGCGTACCGCTATGATGGCCCGGA
GGTGAATACGTCGTTGGCGCACTCTGAAGCCAAGATACTCCATGCGAAGATCAGCGAGAA
GGCCTACAGTGATGATGAGGTCGTCAGGATTCTCACTACAAGGAGCAAAGCTCAGCTACT
TGCAACATTCAACAGCTACAATGATCAGTTCAGTCACCCTATCACCAAGATCCCAAGGAC
GAGTTCCTCTCGACCCTGAGGGCGATCATAAGGTGTTTCACTTGCCCCGACAGATACTTT
GAGAAGGTCATCCGGTTGGCTCTTGGTGGTGTCGGTACAGACGAGCACACCCTTACTAGG
GTGATAACCACTCGTGCCGAGGTGGACCTGAAGGTGATAAAGGAGGCGTACCAGAAGAGG
AACAGCGTCCCCCTGGAGAAGGCTGTTTCCAAGGACACAACCAGAGACTATGAAGATATG
ATGCTTGCACTTCTGGGAGCAGAGTACTGAGGTCATATGTTTGATCTACCTTATGTTTGA
TGGAGGAATAAGAGATTAAGAGCGCATAAAACTGGCGAGTGTGTTGTTTTTCATGGATGA
TTATAAGCTAGCCTGCATGGCAGTGCTCTTCCGATAAATTATATCATTTCGTCATTTAAG
CTGCAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_15134 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g51750.1	315	1e-78	protein\|annexin, putative, expressed
Brachypodium v1_2	Bradi1g45487.1	315	7e-72
Arabidopsis v10	AT5G65020.1	317	3e-51	\| Symbols: ANNAT2 \| annexin 2 \| chr5:25973915-25975554 FORWARD LENGTH=317