barSeed - Barley Seed Development Database

Probe CUST_22743_PI390587928

Source Contig U35_15135

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22743_PI390587928	Hv_44K_v2	AATAACTACAATGACACATTTGGTCACCCAATCACCAAGGATCTGAAGGCTGACCCCAAG	503	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36316.2	1199	2e-24	628 - 687	100	60 / 60	plus	ABC03349 ABC03350 ABC39376 ABC49906
MLOC	MLOC_36316.1	1912	2e-24	1266 - 1325	100	60 / 60	plus	ABC03349 ABC03350 ABC39376 ABC49906
JLOC1	JLOC1_23366.1	1683	8e-25	894 - 953	100	60 / 60	plus
Harvest21	ABC03350	1445	3e-25	727 - 786	100	60 / 60	plus	ABC03350
Harvest21	ABC03348	669	3e-25	504 - 563	100	60 / 60	plus
Harvest35	U35_15137	1477	3e-25	759 - 818	100	60 / 60	plus
Harvest35	U35_15135	669	3e-25	504 - 563	100	60 / 60	plus

Contig Sequence (669 bp)

>U35_15135 669 Hv_44K_v2
GCATCCCTTCCCCCGCCCGACCTCGAGATCCCGCATCGCGTCGCGCGTCCGACCCCCCGG
CACCGGCAGGCAGGCACCCGGTCCCGATGGCGACGCTCAAGGTCCCCTCCAACGTCCCCG
CCCTCGCCGACGACTGCGACAACCTCCGCAAGGCCTTCCAAGGGTGGGGCACGAACGAGG
CGCTCATCATCTCCATCCTGGGCCACCGCGACGCCGCGCAGCGCCGCGCCATCCGCAAGC
ACTTCGCCGTCAGGCAGGCCTACCATGACCGCTTCAAGCGCTCGCTCGAGGAGGACGTCG
CTGCGCACGTCACCGGCGACTTCCGCAAGCTCTTGGTGCCACTTGTAAGCTCATACCGCT
ATGAGGGACCAGAGGTCAACACAAGGTTGGCACATTCAGAGGCCAAAATACTGCATGAGA
AGATCGAGCACAAGGCTTACGGTGATGATGAGATCATCAGAATCCTCACCACCAGGAGCA
AAGCTCAGCTGCTTGCAACACTCAATAACTACAATGACACATTTGGTCACCCAATCACCA
AGGATCTGAAGGCTGACCCCAAGGATGAGTTCCTCAAAACCCTGCGGGCGGTTATCCGGT
GCTTCACCTGCCCTGATAGGTACTTTGAGAAGGTTGCCAGGTTGGCCATTGCAGGGAATG
GAACCGATG

Homology of Contig U35_15135 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g11800.1	318	2e-86	protein\|annexin, putative, expressed
Brachypodium v1_2	Bradi1g45487.1	315	2e-91
Arabidopsis v10	AT5G10230.1	316	9e-55	\| Symbols: ANNAT7, ANN7 \| annexin 7 \| chr5:3209738-3211396 REVERSE LENGTH=316