barSeed - Barley Seed Development Database

Probe CUST_22742_PI390587928

Source Contig U35_15136

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22742_PI390587928	Hv_44K_v2	TGGCAGTGCTCTTCCGATAAATTATATCATTTCGTCATTTAAGCTGCAGAAATATCATTG	1154	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51591.1	3346	2e-24	614 - 673	100	60 / 60	minus	ABC03349 ABC03350 ABC49926
MLOC	MLOC_51591.2	1513	2e-24	271 - 330	100	60 / 60	minus	ABC03349 ABC03350 ABC49926
JLOC1	JLOC1_32971.1	1686	8e-25	1318 - 1377	100	60 / 60	plus
Harvest21	ABC03349	1209	3e-25	1150 - 1209	100	60 / 60	plus	ABC03349
Harvest35	U35_15136	1288	3e-25	1155 - 1214	100	60 / 60	plus
Harvest35	U35_15134	683	8e-21	618 - 669	100	52 / 52	plus

Contig Sequence (1288 bp)

>U35_15136 1288 Hv_44K_v2
TCGAGCACTGTTGGCCTAGGACATCCATCCGTCTCCCCGGAACGCGGCGAGGCGCACACG
CACGGACGGACAGACGAACCGGACCGGACCGGACCGGAAATGGCGACGCTCTCCGTCCCC
GCCGCCGTCCCGGCCGTGGCCGAGGACTGCGAGCAGCTCCGCAAGGCGTTCGCCGGGTGG
GGCACCAACGAGCGGCTCATCATCTCCATCCTGGCCCACCGCGACGCCGCGCAGCGCCGC
GCCATCCGCAAGCACTACGCCGACGCCTACGGCGAGGAGCTGCTCCGCTCCATCACCGAC
GAGATCCACGGCAAGTTCGAGAGGGCGGTGATCCAGTGGACGCTGGACCCGGCGGAGCGG
GACGCGGTGCTGGCCAACGAGGAGGCCAAGAAGTGGAACCCGGGGGGCCGCGCGCTCGTC
GAGATCGCCTGCGCGCGCACCCCCGCGCACCTCTTCGCCGCCAAGCAGGCCTACCACGAC
CGCTTCAAGCGCTCGCTCGAGGAGGACGTCGCCGCGCACGTCACCGGCGACTTCCGCAAG
CTTTTGGTGCCTCTTGTAAGCGCGTACCGCTATGATGGCCCGGAGGTGAATACGTCGTTG
GCGCACTCTGAAGCCAAGATACTCCATGCGAAGATCAGCGAGAAGGCCTACAGTGATGAT
GAGGTCGTCAGGATTCTCACTACAAGGAGCAAAGCTCAGCTACTTGCAACATTCAACAGC
TACAATGATCAGTTCAGTCACCCTATCACCAAGGACCTCAAGGAAGATCCCAAGGACGAG
TTCCTCTCGACCCTGAGGGCGATCATAAGGTGTTTCACTTGCCCCGACAGATACTTTGAG
AAGGTCATCCGGTTGGCTCTTGGTGGTGTCGGTACAGACGAGCACACCCTTACTAGGGTG
ATAACCACTCGTGCCGAGGTGGACCTGAAGGTGATAAAGGAGGCGTACCAGAAGAGGAAC
AGCGTCCCCCTGGAGAAGGCTGTTTCCAAGGACACAACCAGAGACTATGAAGATATGATG
CTTGCACTTCTGGGAGCAGAGTACTGAGGTCATATGTTTGATCTACCTTATGTTTGATGG
AGGAATAAGAGATTAAGAGCGCATAAAACTGGCGAGTGTGTTGTTTTTCATGGATGATTA
TAAGCTAGCCTGCATGGCAGTGCTCTTCCGATAAATTATATCATTTCGTCATTTAAGCTG
CAGAAATATCATTGGTGTTTTGAAAGTTTTAAAAAAAAAAAAAAAAATCATTTGCACTGG
TGTTATTCTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15136 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g51750.1	315	0.0	protein\|annexin, putative, expressed
Brachypodium v1_2	Bradi3g58830.1	316	0.0
Arabidopsis v10	AT5G10230.1	316	9e-129	\| Symbols: ANNAT7, ANN7 \| annexin 7 \| chr5:3209738-3211396 REVERSE LENGTH=316