barSeed - Barley Seed Development Database

Probe CUST_22741_PI390587928

Source Contig U35_15137

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22741_PI390587928	Hv_44K_v2	GTAAGCCTGAAAAATCTGAATTGCATCTGTATTTTGCTTGAATTGAATCGAGTACATCAG	1328	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.651	1.537	1.089	0.876	0.315	0.248
Raw	8001.310	11679.267	7137.060	9149.563	1131.096	983.186

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36316.1	1912	2e-24	1836 - 1895	100	60 / 60	plus	ABC03349 ABC03350 ABC39376 ABC49906
JLOC1	JLOC1_23366.1	1683	8e-25	1464 - 1523	100	60 / 60	plus
Harvest21	ABC03350	1445	3e-25	1297 - 1356	100	60 / 60	plus	ABC03350
Harvest21	ABC39376	418	6e-22	93 - 152	97	58 / 60	minus	ABC39376
Harvest35	U35_15137	1477	3e-25	1329 - 1388	100	60 / 60	plus

Contig Sequence (1477 bp)

>U35_15137 1477 Hv_44K_v2
TCGAGCACTGTTGGCCTAGAGCCCCGGCCCCGCGGAAACGCGCAATCCATCGTCCACCCC
TCCCTTCCCCCGCCCGACCTCGAGATCCCGCATCGCGTCGCGCGTCCGACCCCCCGGCAC
CGGCAGGCAGGCACCCGGTCCCGATGGCAACGCTCAAGGTCCCCTCCAACGTCCCCGCCC
TCGCCGACGACTGCGACAACCTCCGCAAGGCCTTCCAAGGGTGGGGCACGAACGAGGCGC
TCATCATCTCCATCCTGGGCCACCGCGACGCCGCGCAGCGCCGCGCCATCCGCAAGCACT
ACGCCGACACCTACGGCGAGGAGCTGCTCCGGAGCATCACCGACGAGATCTCAGGCGACT
TCGAGAGGGCCGTGATCCTGTGGACGCTGGACCCCGCGGAGCGGGACGCGGTGCTCGCCA
ACGAGACCGCCAAGAAGTGGCACCCGGGGAACCCCGTGCTCGTCGAGATCGCCTGCTCGC
GCGGCTCCGCGCAGCTCTTCGCCGTCAGGCAGGCCTACCATGACCGCTTCAAGCGCTCGC
TCGAGGAGGACGTCGCTGCGCACGTCACCGGCGACTTCCGCAAGCTCTTGGTGCCACTTG
TAAGCTCATACCGCTATGAGGGACCAGAGGTCAACACAAGGTTGGCACATTCAGAGGCCA
AAATACTGCATGAGAAGATCGAGCACAAGGCTTACGGTGATGATGAGATCATCAGAATCC
TCACCACCAGGAGCAAAGCTCAGCTGCTTGCAACACTCAATAACTACAATGACACATTTG
GTCACCCAATCACCAAGGATCTGAAGGCTGACCCCAAGGATGAGTTCCTCAAAACCCTGC
GGGCGGTTATCCGGTGCTTCACCTGCCCTGATAGGTACTTTGAGAAGGTTGCCAGGTTGG
CCATTGCAGGGAATGGAACCGATGAGAACTCCCTCACTAGGGTCATAACGACCCGCGCCG
AGGTGGACCTGAAGCTGATCAAAGAGGCATACCAGAAGAGGAACAGTGTCCCCTTGGAGA
AGGCCGTCGCAGGCGACACCTCCGGCGACTACGAGACCATGCTCCTTGCCCTCCTGGGGA
AGGAGTGAGCCTTGCCTCTGTATCCACCCCCTGTTATCCTTTTCATATCTCAAATCAGAG
AATAAACCCTGGTATGCAAGGCCGTTTTCAACGCTGGTTATGATCTGCTGCGCCTTGCAT
AACGGTGAGAATAAGATAGAGAGAGGTGTGCTTTACGATGAGTCATGCATGGTGATACGT
TTTTGTACTAGCTTAGATGTTCATTCGCGTGTGAAATGCAGTGGAGATGTTAAAAAAGTG
AGTTTTCTGTAAGCCTGAAAAATCTGAATTGCATCTGTATTTTGCTTGAATTGAATCGAG
TACATCAGTTCCTAAAAAAAAAAAAAAAAAAGAAGGTTATACTCCATCTGTTCCTAAATA
TAAGTCTTTTCAGAAGTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15137 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g11800.1	318	0.0	protein\|annexin, putative, expressed
Brachypodium v1_2	Bradi1g45487.1	315	0.0
Arabidopsis v10	AT5G65020.1	317	3e-133	\| Symbols: ANNAT2 \| annexin 2 \| chr5:25973915-25975554 FORWARD LENGTH=317