barSeed - Barley Seed Development Database

Probe CUST_22721_PI390587928

Source Contig U35_15142

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22721_PI390587928	Hv_44K_v2	AGAGTCGCTAAAGCTGGCGTATGGTGAGGACTCCGAGTTCATCAAAGATAAAAGAATTGC	382	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364730	1823	2e-24	438 - 497	100	60 / 60	plus	ABC02799 ABC02803
MLOC	MLOC_80438.1	1524	2e-24	1239 - 1298	100	60 / 60	minus	ABC02799 ABC02803
JLOC1	JLOC1_53553.1	1732	8e-25	229 - 288	100	60 / 60	plus
Harvest21	ABC02799	1724	3e-25	348 - 407	100	60 / 60	plus	ABC02799
Harvest35	U35_15149	1927	3e-25	454 - 513	100	60 / 60	plus
Harvest35	U35_15142	442	3e-25	383 - 442	100	60 / 60	plus

Contig Sequence (442 bp)

>U35_15142 442 Hv_44K_v2
CCCTGCTCCGGCGACCGGCAAGCCGGCCAAGAAGCCCACTGCCTACCCCTCAAGCCGGAT
CCGCCATGGCGCTGTACCGCCGCGCGGCCTCCGCGATCCGGCGGCGCGGGGCCCCGTCCA
CGCCCCTGCCGCTGCTCCCGGCGCGGGCCATGGCGTCGCTCCTCGGCCACGTCGAGCCGG
CGCCCAAGGACCCCATCCTCGGCGTCACCGAGGCCTTCCTCGCCGACCCCTCCCCCGACA
AAGTCAACGTCGGCGTCGGCGCCTACCGGGACGACGACGGCAGGCCCGTCGTGCTCGACT
GCGTGCGCGAGGCGGAGCGCCGGATCGCCGGCAACCTCAACATGGAGTACCTTCCCATGG
GAGGGAGTATCCACATGATTGAAGAGTCGCTAAAGCTGGCGTATGGTGAGGACTCCGAGT
TCATCAAAGATAAAAGAATTGC

Homology of Contig U35_15142 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g14110.1	433	5e-57	protein\|aminotransferase, classes I and II, domain containing protein, expressed
Brachypodium v1_2	Bradi3g09050.2	389	2e-60
Arabidopsis v10	None