barSeed - Barley Seed Development Database

Probe CUST_22635_PI390587928

Source Contig U35_38179

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22635_PI390587928	Hv_44K_v2	CTTCTTTGAAAAGAGCTACTGAATTTGTGTACTCTGCAATACTGCCTCAAGCATCGAAAC	629	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367944	2481	2e-24	929 - 988	100	60 / 60	plus	ABC19362
MLOC	MLOC_20085.1	607	2e-24	288 - 347	100	60 / 60	plus	None
JLOC1	JLOC1_13935.1	589	8e-25	268 - 327	100	60 / 60	plus
Harvest21	ABC34036	692	3e-25	630 - 689	100	60 / 60	plus
Harvest35	U35_38179	692	3e-25	630 - 689	100	60 / 60	plus

Contig Sequence (692 bp)

>U35_38179 692 Hv_44K_v2
CGACGGCCACGGCATCCGGTGTGAGGACTTGCCAATATTGTGTGAGAGGCATACTACCTC
AAAGTTGTCTGCATATGAGGATCTACAGACAATAAAGTCCATGGGGTTCAGAGGGGAGGC
TTTGGCCAGTATGACTTATGTTGGCCATGTTACCGTGACAACAATAACAGAAGGCCAACT
GCATGGCTACAGAGTTTCTTATAGGGATGGAGTAATGGAGAATGACCCAAAGCCCTGTGC
TGCGGTTAAAGGAACTCAAATCATGGTTGAAAATTTATTCTACAATATGGTAGCTCGTAG
GAAAACACTGCAGAACTCCAATGATGACTATCCAAAGATAGTGGACTTCATCAGTCGGTT
TGCAGTCCATCACATCAATGTGAACTTCTCTTGCAGAAAGCATGGAGCCAATAGAGCAGA
TGTTCACAGTGGGAGCACATCTTCAAGGCTAGATGCTATCAGGAATGTCTATGGGGCTTC
GGTTGTTCGTGATCTGATGGAAATACAGGTTTCAGATGAGAATGCTGTAGATGAAATATT
CAAGATGGATGGTTTCATCTCAAATGCAAATTATGTGGCAAAGAAGACTACTATGATTCT
TTTCATAAATGATCGACTTGTAGATTGCACTTCTTTGAAAAGAGCTACTGAATTTGTGTA
CTCTGCAATACTGCCTCAAGCATCGAAACCCT

Homology of Contig U35_38179 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g72880.1	725	2e-144	protein\|DNA mismatch repair protein Mlh1, putative, expressed
Brachypodium v1_2	Bradi2g61370.1	726	3e-152
Arabidopsis v10	AT4G09140.1	737	1e-114	\| Symbols: ATMLH1, MLH1 \| MUTL-homologue 1 \| chr4:5817107-5821035 REVERSE LENGTH=737