barSeed - Barley Seed Development Database

Probe CUST_22598_PI390587928

Source Contig U35_9111

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22598_PI390587928	Hv_44K_v2	TTCAGCCAGAACGTCAACTCCATCGGCGCTTTCGCCAGCCAGACAACGGTTAACGCTGTT	232	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_25346.1	1173	2e-24	91 - 150	100	60 / 60	plus	ABC06007 ABC15484 ABC31215
JLOC1	JLOC1_17334.1	1166	8e-25	91 - 150	100	60 / 60	plus
Harvest21	ABC18693	675	3e-25	233 - 292	100	60 / 60	plus
Harvest35	U35_9111	675	3e-25	233 - 292	100	60 / 60	plus

Contig Sequence (675 bp)

>U35_9111 675 Hv_44K_v2
CGGAATTCCCGGGCAACAATCAATCGATATGGCTTCTTCCATGCCTTGCCTTGTCCTACT
CTTGGGCATGGCCTGCCTTCTGCAGGCATCACTAACCACGGCCGCCGACCCGCCGCAGCG
GCCACCATGGGAGCTGCCGGAATCCGAGATGAGGGCCAGGTGGTCCAGGTGGATGACCAA
GTACTCGAAGCGCTACTCTGGCCCCGAGGAGAGGGAGAAACGGTTCCAGATCTTCAGCCA
GAACGTCAACTCCATCGGCGCTTTCGCCAGCCAGACAACGGTTAACGCTGTTGTCGGCGG
ATTCGGGCCCCAGACCATCACCACGGTCACCGTCGGCATGAACAGGTTCGGCGACCTCAA
CCCCAGCGAGGTCGTCGCGCAGTTCACAGGTTCCAACAACACCGGCTTCATCCCGGAAGC
TCCAACCTACCTCCCCAACGATGACTCACGGAAGCCATGCTGCGTCGACTGGCGCTCCCA
GGGTGCCGTCACCGGCGTCAAGTTTCAGGGCACTTGCTTGTCTTGCTGGGCGTTTGCGGC
GGTGGCGGCCATCGAGGGCATGAACAAGATCAGGACCGGTGAGCTGGTGTCGCTCTCGGA
GCAGCAGCTCGTGGACTGCGACACCCGCAGCAGCGGGTGCAGCGGTGGCCGGTCCGACAC
CGCGATGGGCCTCGT

Homology of Contig U35_9111 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g22680.1	368	1e-78	protein\|fruit bromelain precursor, putative, expressed
Brachypodium v1_2	Bradi2g07010.1	365	3e-88
Arabidopsis v10	None