barSeed - Barley Seed Development Database

Probe CUST_22581_PI390587928

Source Contig U35_9130

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22581_PI390587928	Hv_44K_v2	TGATCAAGATTCTGTACTGTGGGATCTGCCACTCTGACCTACACTGCATCAAGAACGAAT	274	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353779	1566	2e-24	263 - 322	100	60 / 60	plus	ABC07292 ABC19854 ABC35280 ABC49731
MLOC	MLOC_3734.1	1589	2e-24	515 - 574	100	60 / 60	plus	ABC07292 ABC19854 ABC35280 ABC49731
JLOC1	JLOC1_2249.1	1788	8e-25	488 - 547	100	60 / 60	plus
Harvest21	ABC26154	558	3e-25	240 - 299	100	60 / 60	plus
Harvest35	U35_9130	593	3e-25	275 - 334	100	60 / 60	plus

Contig Sequence (593 bp)

>U35_9130 593 Hv_44K_v2
TCGAGCACTGTTGGCCTACGGACCGTTGCAGCCACCGACAACACCTACAGTAGAGACGCG
CCACCCGCCCCACCACACCACTCTGGAATCAGTAGTCAAGAAGGCAAGAACTCTCCGGCC
GGCCGGACCCCGAGCTCGCGTGCGTCAGTCAGGATGGCACCCACGGCGGCGGAGCAGCAC
ACGAGGAAGGCGGTGGGCCTGGCGGCGCGCGACGCCTCCGGCCACCTCTCCCCGCTCGCC
ATCACCCGGAGGAGCACTGGAGATGACGATGTGGTGATCAAGATTCTGTACTGTGGGATC
TGCCACTCTGACCTACACTGCATCAAGAACGAATGGAAGAACGCCAGGTACCCCATGATC
CCTGGGCACGAGATCGCCGGCGAGGTCACCGAGGTCGGCAAGAATGTGACCAAGTTCAAG
GCCGGCGACCGTGCGGGCGTCGGGTGCATGGTGAACTCATGCCAGTCCTGCGAGAGCTGC
GACAAGGGCTTCGAGAACCATTGCCCGGGCATAATCGCCACCTATAACTCGGTCGACCTT
GACGGCACCATCACCTACGGTGGCTACTCCAGCATGGTGGTGGTGCACGAGCG

Homology of Contig U35_9130 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g16910.1	333	2e-82	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g17920.1	372	1e-89
Arabidopsis v10	AT4G37970.1	363	2e-59	\| Symbols: ATCAD6, CAD6 \| cinnamyl alcohol dehydrogenase 6 \| chr4:17849672-17852145 FORWARD LENGTH=363