barSeed - Barley Seed Development Database

Probe CUST_22574_PI390587928

Source Contig U35_9138

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22574_PI390587928	Hv_44K_v2	CTTGAGAACTTACCAGTGGATTTGGAACACATATTATAGACTTACAGTCTCATAGATCAT	828	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376476	2389	2e-24	2300 - 2359	100	60 / 60	plus	ABC20642 ABC40816
JLOC1	JLOC1_35638.1	1678	8e-25	1556 - 1615	100	60 / 60	plus
Harvest21	ABC20642	989	3e-25	829 - 888	100	60 / 60	plus	ABC20642
Harvest35	U35_9138	989	3e-25	829 - 888	100	60 / 60	plus

Contig Sequence (989 bp)

>U35_9138 989 Hv_44K_v2
GCTAGAATCGAGAATCCTACGCAGACTGGTGACATGGGTGCTCCCTCTTTCTTTGGGCAA
TTGCCACAAGCACAGCAGAATGGAGCAGCGCCTACTTCTCTTGGAGGCATGCAGCCATCG
CTGCAGGCAAATCAAGCACCGGGTGCATTTCCACCACCTCCCCCTCCACTGCCACCACTT
GTGCAGCAATTCAGTCAAAATGGTGGAGGAATGTTTGGAATGGGACCTTTTGGGATGCTG
GCCAGCTCTATGCCACCTCCACTGCCGAACATGCCACCTCCACTGCCGAACATGCCACCT
CCAGGCTTTCCAAGGCCAAGTGGGCCGCCACCTCCACCTCCTTTTTCACCAGCCCAGAAT
CAGAGCCAGACCCAGCAGCAGCAGCAGCAGTCTCCACAGGCACCGCAGCAATCTCCAACA
TCAACTGGTTTCTTTCCAACACAAGGCATTGGGTTCTTCCATCCGGTTCAGATGCAGCAA
TCACCGTCGGTCCAGCGGCAATGATTACATAGCAACCGTCAGGCTAAAAAGGTGTCAGTT
TCGGCCTAATTTTGTATATTAAGCAATAATTCCAGAGTGTTAGTTGGCAGGTCTGCAGGC
AAAGCAGGATCATCAATGCTTATGAATCCCAAAGGTTTGTAGAATAGGTTGGTGGTTTGT
GTGATGTATAACTGATAACTTTCCGTTTTCGTTTTGGTATGAGGAGGCTCATCATATGAA
GTGGTTAGGGCTCTTCTTCGTTGATCTGTAGCTCCTTAATTGGTCCTGAGGCAGACAAAC
GCTGGTGCTTGAGGAGCTGCCCAGACGATGGAACATTGGGCTCCTCAACTTGAGAACTTA
CCAGTGGATTTGGAACACATATTATAGACTTACAGTCTCATAGATCATGTTTTTTGTTTA
ATTTAAATCGTTTAGACTAACATTGGTTTGCATTTATTTATTGATTTAAATATAGTGTTT
CGTTTAGTCTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_9138 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None