- Probe CUST_22496_PI390587928
- Source Contig U35_29463
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_22496_PI390587928 | Hv_44K_v2 | GTGATTTTGTCTTTTCTTGAGAAACTTCACAGGCAGTATGTCGTGAAGAGAAATCAACGT | 482 | GeneList: darkorange2 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.245 | 1.073 | 1.654 | 1.233 | 0.559 | 0.461 |
Raw | 233.493 | 297.197 | 415.014 | 455.902 | 76.827 | 70.007 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_75016.4 | 3324 | 2e-24 | 377 - 436 | 100 | 60 / 60 | minus | ABC12137 ABC28939 |
MLOC | MLOC_75016.2 | 4083 | 2e-24 | 410 - 469 | 100 | 60 / 60 | minus | ABC12137 ABC28939 |
MLOC | MLOC_75016.3 | 4309 | 2e-24 | 384 - 443 | 100 | 60 / 60 | minus | ABC12137 ABC28939 |
MLOC | MLOC_75016.1 | 3979 | 2e-24 | 410 - 469 | 100 | 60 / 60 | minus | ABC12137 ABC28939 |
JLOC1 | JLOC1_50019.6 | 2755 | 8e-25 | 2278 - 2337 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_50019.5 | 4013 | 8e-25 | 3534 - 3593 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_50019.4 | 3166 | 8e-25 | 2687 - 2746 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_50019.3 | 3932 | 8e-25 | 3453 - 3512 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_50019.2 | 4032 | 8e-25 | 3555 - 3614 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_50019.1 | 4011 | 8e-25 | 3534 - 3593 | 100 | 60 / 60 | plus | |
Harvest21 | ABC28753 | 545 | 3e-25 | 483 - 542 | 100 | 60 / 60 | plus | |
Harvest35 | U35_29463 | 545 | 3e-25 | 483 - 542 | 100 | 60 / 60 | plus |
Contig Sequence (545 bp)
>U35_29463 545 Hv_44K_v2 ATTGAAAACTCCTGCTGAAGATACTTCAAACCAGAAGAAAGAAGAAGGATTTAAAGCTCC TGCTGAAGATACCTCAAATCAGAAGAAAGAACAGGAGTTGGAGATAAAGGGAGACATAAT GACTGATGATCAGAAGGCAAATATAGATAAGGTGCAGGAAGTTGTGGAACAGAAAGATGC AAAAATTGCTGAAACAGATGGGAAGAGTGACAAGAAAAATGATGACAGCGAAGCAAAGGA TAAAGACCAGAAGCTGGAGATAAAGGGATACACCAAAGAAAAGAAGAAGTCTGATGAACC TCCGAAGCACCCAGGATTCATTCTCCAGGCCAAAAAGAGCAAAGGATATAAATTTCGTTC AACATCCCTTTCATTGGATGGCCTCCTGGACTACACCGCCAATGATACAGAGGAGTCTGT ATTCGAGCTTTCTTTGTTTGCTGAGTCTTTCAGCGAAATGCTTCAATACAGAATGGGGTT GTGTGATTTTGTCTTTTCTTGAGAAACTTCACAGGCAGTATGTCGTGAAGAGAAATCAAC GTAAG
Homology of Contig U35_29463 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | Bradi1g37780.1 | 1376 | 5e-64 | |
Arabidopsis v10 | None |