barSeed - Barley Seed Development Database

Probe CUST_22483_PI390587928

Source Contig U35_17491

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22483_PI390587928	Hv_44K_v2	TGTTGCTAAGTTGCGTTGGTTGGTGTTGAAGTAGCATATAATTTTCCAATTAAAGGATGT	983	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.604	1.461	1.117	0.939	0.333	0.333
Raw	2149.693	3104.289	2053.770	2718.655	339.084	368.248

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358333	1100	2e-24	980 - 1039	100	60 / 60	plus	ABC07813
MLOC	MLOC_66309.1	3627	2e-24	35 - 94	100	60 / 60	minus	ABC07813
JLOC1	JLOC1_43679.1	985	8e-25	865 - 924	100	60 / 60	plus
Harvest21	ABC07813	1127	3e-25	983 - 1042	100	60 / 60	plus	ABC07813
Harvest35	U35_17491	1128	3e-25	984 - 1043	100	60 / 60	plus

Contig Sequence (1128 bp)

>U35_17491 1128 Hv_44K_v2
GCTTTGTGTTTCTTCCTACACCGGCAAACCCTCCAAACCCTCCCAACACAGCCCAACAAA
GAGGAAGCGAGAGCCGCCACGATGCAGCAAGCGATGCCCATGCCGCCGGCGGCGGCGGCG
CCTGGGATGCCTCCTTCTGCCGGCCTCAGCACCGAGCAGATCCAAAAGTACCTGGATGAA
AATAAACAACTAATTTTGGCTATCTTGGAAAATCAGAACCTGGGAAAGTTGGCGGAATGT
GCTCAGTATCAAGCTCAGCTTCAGAAGAATCTTTTGTATTTGGCTGCGATTGCTGATACT
CAGCCACAGACCTCTGTAAGCCGTCCTCAGATGGCACCACCTGCTGCATCCCCAGGGGCA
GGGCATTACATGTCACAGGTGCCAATGTTCCCTCCGAGGACCCCTCTAACGCCTCAGCAG
ATGCAGGAGCAGCAACTACAGCAACAACAGGCTCAGATGCTTCCGTTTGCTGGTCAAATG
GTTGCGAGACCCGGGGCTGTCAATGGCATTCCCCAGGCCCCTCAAGTTGAACAACCAGCC
TATGCAGCAGGTGGGGCCAGTTCCGAGCCTTCTGGCACCGAGAGCCACAGGAGCACTGGC
GCCGATAACGATGGTGGGAGCGGCTTGGCTGACCAGTCCTAAGAAAGCTACGAGCTTGCG
TTTTAGGTCGCAGAATGCATGTATACTAGCACCCGGACAAACAGAGGATCATTCCTGTGC
CCTTGAATGATAAGTGGCCGTGATCTTGGCGTGGATGATGAAGAGTAGTAGCTGTTATGC
TTGCCTTGGCTTTACCGATTACAACAGACGTAGATTATTATCATCTGTGCTGTGCTTGAC
TTTCTGCATTTTATCATAGGTCTTGTATCCAGTTTACATGGAATAATAGGTCCCAGTTGT
TTGTTCCTCGTGATGGTTGTTGTCTGTCAACTAGACTAGTGTACAATCCTGAAATGGTGG
TAAGATGTTTTTTCTCCAGCAGTTGTTGCTAAGTTGCGTTGGTTGGTGTTGAAGTAGCAT
ATAATTTTCCAATTAAAGGATGTTTCATTTGTCTTGTGAATCCTGATTATTTTAGCGGGA
TCTTATAACTATCATATACTCAGCATATTATAAAAAAAAAAAAAAAAA

Homology of Contig U35_17491 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g31350.1	186	7e-71	protein\|SSXT protein, putative, expressed
Brachypodium v1_2	Bradi4g07090.1	193	6e-86
Arabidopsis v10	None