- Probe CUST_22480_PI390587928
- Source Contig U35_31786
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22480_PI390587928 | Hv_44K_v2 | GTGGAACTGGCTCTGGCCTTGGTTCTCTCCTTCTTGAGCGCCTCTCTGTTGACTATGGAA | 502 | GeneList: orange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.910 | 0.899 | 2.166 | 2.246 | 0.930 | 0.726 |
| Raw | 2630.507 | 3695.053 | 8495.537 | 13743.633 | 2078.140 | 1748.223 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_69930.1 | 2090 | 2e-24 | 989 - 1048 | 100 | 60 / 60 | minus | ABC00127 ABC00169 ABC00333 ABC00411 ABC00803 ABC00902 ABC50944 |
| MLOC | MLOC_69930.2 | 1479 | 2e-24 | 985 - 1044 | 100 | 60 / 60 | minus | ABC00127 ABC00169 ABC00333 ABC00411 ABC00803 ABC00902 ABC50944 |
| JLOC1 | JLOC1_46368.1 | 2257 | 8e-25 | 844 - 903 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00915 | 630 | 3e-25 | 567 - 626 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00496 | 671 | 3e-25 | 572 - 631 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00089 | 1702 | 3e-25 | 580 - 639 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC47741 | 600 | 6e-22 | 539 - 598 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_31786 | 562 | 3e-25 | 503 - 562 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14080 | 674 | 3e-25 | 575 - 634 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14073 | 1699 | 3e-25 | 580 - 639 | 100 | 60 / 60 | plus |
Contig Sequence (562 bp)
>U35_31786 562 Hv_44K_v2 AAGCAGAGACATCGCAGAGACCGGCGTCTTCGTACTCGCCTCTCTCTCGCGCCTCCGAGC TTTGGCCTCCGTCCTCCCTCCCTCCCTGCCCTCCCGCCCGCTTCCGGTTTCTCCACCGCC GTAGCGCCCGCCGCTCCGATCCGCCGGCGACATGAGGGAGTGCATCTCGATCCACATCGG CCAGGCCGGCATCCAGGTCGGGAACGCCTGCTGGGAGCTCTACTGCCTCGAGCACGGCAT TCAGCCTGATGGACAGATGCCCGGGGACAAGACTTTGTTGACCTTGAGCCCACTGTGATT GATGAGGTGAGGACTGGCACTTACCGCCAGCTCTTCCACCCTGAGCAGCTTATCAGTGGC AAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCATTGGCAAGGAGATTGTT GACCTATGCCTTGACCGTATCAGGAAGCTTGCAGATAACTGTACTGGTCTCCAGGGATTC CTTGTCTTCAACGCTGTTGGAGGTGGAACTGGCTCTGGCCTTGGTTCTCTCCTTCTTGAG CGCCTCTCTGTTGACTATGGAA
Homology of Contig U35_31786 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g14220.1 | 452 | 1e-59 | protein|tubulin/FtsZ domain containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g10150.1 | 452 | 1e-59 | |
| Arabidopsis v10 | AT4G14960.2 | 450 | 1e-60 | | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548769-8550319 REVERSE LENGTH=450 |