barSeed - Barley Seed Development Database

Probe CUST_22472_PI390587928

Source Contig U35_17497

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22472_PI390587928	Hv_44K_v2	ACAGATTTGTACAGTCATGAACCTGTTGGTAACTTTAGCATTCCATGTATATATTGTGAC	971	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.186	1.871	1.680	0.817	0.145	0.140
Raw	174.990	414.958	323.042	252.322	15.445	16.909

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_32680.1	1328	8e-25	1202 - 1261	100	60 / 60	plus
Harvest21	ABC09381	1058	3e-25	972 - 1031	100	60 / 60	plus	ABC09381
Harvest35	U35_17497	1058	3e-25	972 - 1031	100	60 / 60	plus

Contig Sequence (1058 bp)

>U35_17497 1058 Hv_44K_v2
GGCACGAGGACTTGAACACGTGCACCGCATCCGTACGCCACAGGCCAAGACGAGGCCATG
GCCGAGGCCGGGGAGCTGGTGGTGAGCGGCGCCCAGCAGGACGACATGCTGCGAGTGGTG
GCCGCCCTGGCCGGCATCCTGGAGCGCGTCGCTGAGTGCAACGACGCGGTGGGCACGCCC
GCGGGGGTGCCGCCGGCGTCGGCGTCGGCGTTCCGGGCAACGACCAAGCCGGGCATCTCG
GTGCGCACGTACGTGGCGCGCATCGCGCGGTTCGCCGGTTGCAGCCCCGCGTGCTACGTC
GTCGCCTACATATACCTCGACCGGCTCCTGCACCGCGCCCGCCGCTTCGCCCTCGCCGTG
GACTCCTACAGCGTGCACCGTCTCCTCATCACCACCGTGCTCGCCGCCGTCAAGTTCATG
GATGACGTATGCTACAACAACGCGTACTTCGCCAAGGTTGGGGGCATCAGCCTGGTCGAG
ATGAACTACCTGGAGGTCGACTTCCTGTTTGGCGTCGGGTTCGACCTCAACGTCACGCCG
GAGACGTTCGGCCACTACTGCGCCGTGCTCCAGTCCGAGATGCTCTGCGCGGAGGCTCCT
CCTGCGCCGCCCAGGCTGCAGCACTGCTGCCTCTCCGAATCCGAGGACGATGCCGCCAGC
TGCGGCAGCCAGCAGCAGCTCGCGGCATGAAACCACCGGCCGGCCAGCACCGGGCTGCTT
GGAAGCAAGTTCGCATTACATTACATGGCCGGTTGCATGATGCGTGCATCTCTGTTAGTC
TGTGTGTTTAAATTTGTAGTGCTAGCCAGATAGCTATAGCTAGGTGGTCGTCATCTTCCT
CCATGCCCTGCTGCAAGATGCTTGCAACAATGATTTCACATCGTGTACTCGTCCTTGGTT
TTTGTTTCTTGTGGTGTGTAGGTCAGTGAGACACTAGCGTGTTAGGCTTTGCTGGATTTT
TCTCTTGTGAAACAGATTTGTACAGTCATGAACCTGTTGGTAACTTTAGCATTCCATGTA
TATATTGTGACATTGGGTTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_17497 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g43550.1	213	4e-89	protein\|cyclin, putative, expressed
Brachypodium v1_2	Bradi3g50350.1	217	8e-98
Arabidopsis v10	None