barSeed - Barley Seed Development Database

Probe CUST_22470_PI390587928

Source Contig U35_17498

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22470_PI390587928	Hv_44K_v2	CAAGGTGTGTGGTGTGCTCTAGTCCACAAGTGACATGTATATTGTTGAATGTTGGATCAT	797	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358760	993	7e-23	918 - 978	98	60 / 61	plus	ABC09381 ABC24544
MLOC	MLOC_66940.1	1954	7e-23	69 - 129	98	60 / 61	minus	ABC09381 ABC24544
JLOC1	JLOC1_44163.2	703	4e-23	590 - 650	98	60 / 61	plus
JLOC1	JLOC1_44163.1	658	4e-23	545 - 605	98	60 / 61	plus
JLOC1	JLOC1_44164.1	2032	4e-23	146 - 206	98	60 / 61	minus
Harvest21	ABC24544	515	1e-23	426 - 486	98	60 / 61	plus	ABC24544
Harvest35	U35_17498	857	3e-25	798 - 857	100	60 / 60	plus
Harvest35	U35_28113	507	1e-23	418 - 478	98	60 / 61	plus

Contig Sequence (857 bp)

>U35_17498 857 Hv_44K_v2
CCGCGGGTGGGTGGCGTCCTCTCCGCGCTCCTGGAGCGCGTAACGGAGCGCAACGACGCG
GCGGCGGGGCCGCGTGCTGCCGCCTCGGCGTTCCGGGCCATGACGAAGCCCGGCATCTCG
GTGCGCGCGTACATGGCGCGCATCGCGCGGTTCGCGGGCTGCAGCCCCGCGTGTTTCGTG
GTGGGCTACATCTACCTCGATCGCCTCCTGGGCCGCCGCCGCGCCCTTGCCGTGGACTCC
TACTGCGTGCACCGCCTCCTCATCACCACCGTGCTCTCCGCCGTCAAGTTCATGGATGAC
ATATGCTACAACAACGCCTACTTCGCCAAGGTGGGCGGGATCAGCCTGCCGGAGATGAAC
TACCTCGAGGTGGACTTCCTCTTCGGCGTCGGCTTCGACCTCAACGTGTCGCCGGAGACG
TTCGGCCACTACTGCGCCATCCTCCAGTCCGAGATGCTCTGCCTGGAGCTGGAGCCGGAG
CCCCTTCTCCCCCCTACCACCGCCTACGCTCCAGGCAGCAGGATGCATTGCTGCGTCTCT
GAAGACGATGGCACTAGCGCCACCGCTACCAGCAACAGCAGTACTCAGCAGCAGCTGGCT
GCATAGGTCGTTAGAGGCATATGTATACAGGACACTGTGTGAGTGCGTACATGTACATGG
TCATGTTGCTCGGGCGAGCAGAGTATGCGAGCTTCCTCGTTGTGATGTGCTGCTGTTTGG
TTCCTTTGGTGTATAGCTTGTTTAGGTGACAGAGGTGGACACTGCAAGAGTGCAGACCGA
CTTGAGCAAGTTGAATACAAGGTGTGTGGTGTGCTCTAGTCCACAAGTGACATGTATATT
GTTGAATGTTGGATCAT

Homology of Contig U35_17498 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g46000.1	213	1e-74	protein\|cyclin, putative, expressed
Brachypodium v1_2	Bradi5g17347.1	223	1e-75
Arabidopsis v10	None