barSeed - Barley Seed Development Database

Probe CUST_22443_PI390587928

Source Contig U35_43771

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22443_PI390587928	Hv_44K_v2	AGAAAGTGAAGCTCGCTTGCATGCACTTCCGCCAGTTCTATGAGGCAAAAAGTAAAGATG	304	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367738	832	7e-23	436 - 495	98	59 / 60	plus	ABC08253
MLOC	MLOC_72595.1	404	7e-23	7 - 66	98	59 / 60	minus	ABC08253
JLOC1	JLOC1_48288.1	968	4e-23	487 - 546	98	59 / 60	plus
Harvest21	ABC40831	378	3e-25	305 - 364	100	60 / 60	minus
Harvest21	ABC08253	907	1e-23	417 - 476	98	59 / 60	plus	ABC08253
Harvest35	U35_43771	378	3e-25	305 - 364	100	60 / 60	minus
Harvest35	U35_17714	907	1e-23	417 - 476	98	59 / 60	plus

Contig Sequence (378 bp)

>U35_43771 378 Hv_44K_v2
CAGCCCTACTCCCGTCCCCGTCCACGCCGCCGCCGCCGCCGCGAATTCCGCCGGCGTCCG
CCCCGCGCGCGCGTGCTCTGCGCCCCCGTGTCGGCCCCGGCGGACCCCAGGACCTCCGGA
TCGGAGCCCCACGCGCCTCGCCATGGCGGCCAACGCGCTCCAGGCCCAGCTCAACGCGCT
CCTTTTCTGCATGTTCGCCACGGGTATGGTGGACGACCAGTTCCAGCAGCTGCAGTCGCT
GGAGGAGGGGGGCTGCGCACATCACAGAACTCACTCCTAACAAGGGCCAACGCCATGAGG
CACCCATCTTTACTTTTTGCCTCATAGAACTGGCGGAAGTGCATGCAAGCGAGCTTCACT
TTCTGAGCGCCAACACTG

Homology of Contig U35_43771 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None