barSeed - Barley Seed Development Database

Probe CUST_2241_PI390587928

Source Contig U35_2979

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2241_PI390587928	Hv_44K_v2	AGTGTCGCTGATCTGTAAAAAATTCTGTCTGTACATGGTATCCGTTGATTCTCTTTCAAA	1536	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.647	1.979	1.505	0.840	0.301	0.249
Raw	13130.110	23471.433	15875.833	13926.527	1753.891	1585.597

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37582.2	1052	2e-23	835 - 892	100	58 / 58	plus	ABC08282
JLOC1	JLOC1_24343.1	1648	1e-23	1448 - 1505	100	58 / 58	plus
Harvest21	ABC08282	1322	4e-24	1229 - 1286	100	58 / 58	plus	ABC08282
Harvest35	U35_2979	1664	3e-25	1537 - 1596	100	60 / 60	plus

Contig Sequence (1664 bp)

>U35_2979 1664 Hv_44K_v2
GCGCAACGGCGGCGGTGGCTGTCGTGGAGGAGCCCAAGGCTGAGGCACCGGCGGCGATGG
CTGCCGCGGAGGAGCCCAAGCCTGATGTGGTGGCCGAGCCGAAGCCGGAGCCGGAGGAGA
AAACCGTTGTGGTGGCCGAGGAGGCAGGCGCCAAAACCGTGGAGGCCATCGAGGAGACCG
TCGTCCCCGCCGCGCCCGAGCCGGAGGCAGCGCCGGTGGCCGAGCCGAAGGAGGAGCTGA
TCTGGGGCGTGCCGCTGGTGGGCGAGGACGAGCGCACGGACACGGTGCTCCTCAAGTTCC
TCCGCGCGCGCGAGTTCAAGGTGAAGGAGGCCATGGCGATGCTCAAGGCGGCCGTGCTGT
GGCGCAAGAGCTTCGGCATCGACGCGCTCCTCGACGCCGACCTCGGCGTGCCGGAGCTGG
AGAACGTGGTGTTCTACCGCGGCGCCGACCGCGAGGGCCACCCCGTCTGCTACAACGTCT
ACAGCGAGTTCCAGGACAAGGACCTCTACGAGAAGGCCTTCGGCGACGACGAGAAGCGGG
AGCGCTTCCTCAAGTGGCGCATCCAGCTCCTCGAGCGCGGCATCCGGGAGCAGCTGGACT
TCTCGCCCAGCGGCATCTGCTCCATGGTGCAGGTCACCGACCTCAAGAACTCACCACCCA
TGCTTGGCAAGCACCGCGCCGTCACCCGCCAGGCGCTCGCGCTGCTCCAGGACAACTACC
CCGAGTTCATCGCCAAGAAGGTGTTCATCAATGTGCCATGGTGGTATCTTGCGGCAAACA
AGGTGATGAGCCCGTTCCTCACACAGCGCACCAAGAGCAAATTCACATTTTGCGGCCCAG
CCAAGACTGCAGAGACCCTTTTCAGATACATCGCGCCCGAGCAAGTCCCTGTCCAATTTG
GTGGTCTCTTCAAGGAGGATGATACTGAATTCTCGACTTCTGATGGCGTCACTGAGCTCA
CTGTCAAGCCTTCTTCCAAAGAAACTATCGAGATTCCTGCTACTGAGAACTCCACGGTCG
TGTGGGAGCTCCGCGTGCTTGGATGGGAGGTGAGCTACGGCGTGGAGTTCACCCCCGACG
CAGAGGGTGGCTACACGGTCATCGTGCAGAAGACGAGGAAGGTGCCCGCCAATGAGGAAC
CGATCATGAAGGGTAGCTTCAAAGCAAGCGAGCCTGGCAAGGTCTTGCTTACCGTCAACA
ACCCAACATCGAAGAAGAAGAAGCTGCTGTGCCGATTCAAGGTCAAGAGCTCCACCGAAT
CCGCCTGAGGCTCCTCAACTGATACTATCGCCAACCAGGTCCATACCACCACCATTTGAA
CATTGTTGCATGATAGAAGGGGGAACAATAAGATTTTAGCTGTCCGTTTTGGCGTCGGGT
TCTTTAATTTGTTGGGCTTGCTGTTTTTTGGGGATCAGACTTGTCGTGTGCGTTTACTTG
AAACCAAAGTGGGCTTGTGCTATGAGATAGCTGGGATCAGAAGGTGGGGAAAATATTGAG
ATAGTGATGGTTCTTGCCATCAGGATGTGCCGAACAAGTGTCGCTGATCTGTAAAAAATT
CTGTCTGTACATGGTATCCGTTGATTCTCTTTCAAAAAAAAAAAAAAAATGTCGATTTTT
AGAAAAAAAAAAAATTTTGTGGTCCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2979 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g35460.1	586	0.0	protein\|patellin protein, putative, expressed
Brachypodium v1_2	Bradi2g24430.3	602	0.0
Arabidopsis v10	AT4G09160.1	668	5e-130	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein \| chr4:5839761-5842158 FORWARD LENGTH=668