barSeed - Barley Seed Development Database

Probe CUST_2238_PI390587928

Source Contig U35_2982

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2238_PI390587928	Hv_44K_v2	CATGCGATGCTTGATTCTTCATGCTGCCTTTTCTCCTTGATTCTTTGATAATATATATGC	777	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.852	6.870	1.551	0.490	0.316	0.264
Raw	229.043	265.140	49.595	26.602	4.339	3.207

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251925.1	854	2e-24	785 - 844	100	60 / 60	plus	ABC07237 ABC07238 ABC07239
MLOC	MLOC_12822.1	2034	2e-24	960 - 1019	100	60 / 60	minus	ABC07237 ABC07238 ABC07239 ABC08996 ABC08997
MLOC	MLOC_12822.2	2123	2e-24	1052 - 1111	100	60 / 60	minus	ABC07237 ABC07238 ABC07239 ABC08996 ABC08997
JLOC1	JLOC1_8620.1	2265	8e-25	958 - 1017	100	60 / 60	minus
Harvest21	ABC07237	864	3e-25	28 - 87	100	60 / 60	minus	ABC07237
Harvest35	U35_2982	864	3e-25	778 - 837	100	60 / 60	plus

Contig Sequence (864 bp)

>U35_2982 864 Hv_44K_v2
GCTCTCTTGCTCGCCCAGGCGGCCATGGAAGCTCTGGCCGTCGCCTCGCCGGCCCTGACG
CGGCCCCAGCCCCGCCGACGATGCCTCGCCGCAGGTTCTTGTAGCTCGTGGTGCCAGAGG
AGGACGAGCCAACTGCACACCTCCTTCAGCGGCGTCACGGTGCAGCTGCACAAACCGCTG
AGCCCAACGGCGACCAGTTCCCGGCGATCATCATCGTCAGTGGTGGCGGTGGCGATGTTG
TCGCGTCCGTCGATCCAGTTCATCCAGGGCACGGACGAGCAGACGATCCCGGACGTGCGG
CTGACCAAGTCCCGGGACGGCAGCAACGGGGTGGCCATCTTCACCTTCGAGCAGCCGTCG
GTGTTCGACTCGTCGGCGGAGCTGGGCGACATCACCGGATTCTACATGGTCGACGAGGAG
GGCACGCTGAGCTCCGTGGACGTCAGCGCCAAGTTCGTCAACGGCAAGCCGGCGGCCGTG
GAGGCCAAGTACGTGATGCGCACCCCCAGGGACTGGGACCGATTCATGCGCTTCATGGAG
CGCTACTCCCAGGCCAACGGCCTCCAGTTCCTCAAGAAGTAGCCATCCGTCCGTTCGTCC
ATCCAATCCATCATCATCATCATCATCATCCATGAATTCATCTTCGATTCTTATTCTTCT
TCTACATGTTTTTGGTTTCATGGATGGATTCCTGACAGAAAACTAGCTGCATTGAGTTCA
GTCATCGCTGTGACTGTTGATTTGTGTGCTCTGTGGCTGCGTACCCTGTTCATTGAGCAT
GCGATGCTTGATTCTTCATGCTGCCTTTTCTCCTTGATTCTTTGATAATATATATGCTTT
TCTGAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_2982 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g71190.1	181	3e-70	protein\|photosystem II reaction center PSB28 protein, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g02550.1	180	8e-76
Arabidopsis v10	AT4G28660.2	198	4e-55	\| Symbols: PSB28 \| photosystem II reaction center PSB28 protein \| chr4:14150008-14150933 FORWARD LENGTH=198