barSeed - Barley Seed Development Database

Probe CUST_22370_PI390587928

Source Contig U35_10378

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22370_PI390587928	Hv_44K_v2	GATGTTGTGTATCTGTGACCTGACTTGATATACTGGATCCTTTTTCTTCTTTTATTCCGC	381	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44757.1	3468	2e-24	1462 - 1521	100	60 / 60	minus	ABC02300 ABC24776 ABC46979 ABC53005
MLOC	MLOC_44757.2	3398	2e-24	1462 - 1521	100	60 / 60	minus	ABC02300 ABC24776 ABC46979 ABC53005
MLOC	MLOC_44755.1	2573	2e-24	1471 - 1530	100	60 / 60	minus	ABC02300 ABC24776 ABC46979 ABC53005
MLOC	MLOC_44757.3	3353	2e-24	1130 - 1189	100	60 / 60	minus	ABC02300 ABC24776 ABC46979 ABC53005
JLOC1	JLOC1_29028.1	3255	8e-25	1878 - 1937	100	60 / 60	plus
JLOC1	JLOC1_29027.1	2713	8e-25	1273 - 1332	100	60 / 60	minus
Harvest21	ABC24776	462	3e-25	24 - 83	100	60 / 60	minus	ABC24776
Harvest35	U35_10378	464	3e-25	382 - 441	100	60 / 60	plus

Contig Sequence (464 bp)

>U35_10378 464 Hv_44K_v2
GGGGAGCATGGAGTGGTCAGAGTTTCAGCAGGCTGTGCAGGCAGGCCACAAAGGTAGATA
CGGGCAGATCCGGCTGAGGAAGCCGAAGCAGTCTATCTATACTTATCCTGCCCCAGATTG
TATGTGCCCAGGGTAGATCGCCAAGTTTTCTGCGGTGCACCGACAAAAGAAATGTGCTGA
GTTACTTGCAGTTTCTAATTAGGTTAAGCTCATGTGGATATGTATATTTAGTTCTGAATT
TTCGGTTGAATCAGTTTGCTGCCACTTCCAATAGGATCTTAAAATTTTAACCAAAATTTA
CGCACTATACGTTGAGCCTTGAAGGACTCTAATCTTGTGCTGTTTGCACGATCCATACGA
CGAAGTTGTAGTTTTGGAGCTGATGTTGTGTATCTGTGACCTGACTTGATATACTGGATC
CTTTTTCTTCTTTTATTCCGCTGTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_10378 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None