barSeed - Barley Seed Development Database

Probe CUST_22352_PI390587928

Source Contig U35_46310

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22352_PI390587928	Hv_44K_v2	ATAAGAGAGGTAGCAAAAGATTGGATTCTAGCGGGAGCAAAAAACCTGGCGGATCTTGTG	212	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9885.1	4414	2e-24	4234 - 4293	100	60 / 60	plus	None
MLOC	AK377065	3964	7e-23	1420 - 1479	98	59 / 60	minus	ABC08067
Harvest21	ABC46231	288	3e-25	213 - 272	100	60 / 60	plus
Harvest35	U35_46310	288	3e-25	213 - 272	100	60 / 60	plus

Contig Sequence (288 bp)

>U35_46310 288 Hv_44K_v2
CATCCTGGCTCTCCTGCCCGGAATTACTGCTTANCATGGGCTCTGGTCGCCCCAAGGTGG
TGGACTACTGGCAGGCCTTANCTAGGTCGCCCTCTTCCTGTCCCAAAGGTCTAAAAACGG
CTATCATGCTCATCACCTGNGAAATCTGGAACGAAAGAAATGAGAGAGTCTTCAACAAGA
AATCCTCTCTGCCGGTGGTGGTCATGCACAAAATAAGAGAGGTAGCAAAAGATTGGATTC
TAGCGGGAGCAAAAAACCTGGCGGATCTTGTGGGCTGATCTGTTTGTT

Homology of Contig U35_46310 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None