barSeed - Barley Seed Development Database

Probe CUST_22277_PI390587928

Source Contig U35_18216

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22277_PI390587928	Hv_44K_v2	CACAGTCGCAGTGGCGCTGTTGCTGCTTTGGCCAATAAAGTTTGTTTGCTGTGTAAAAAA	1163	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21279.2	3780	9e-22	3415 - 3469	100	55 / 55	plus	ABC10264
MLOC	MLOC_21279.1	1260	9e-22	1195 - 1249	100	55 / 55	plus	ABC10264
MLOC	AK366862	2230	3e-21	2177 - 2230	100	54 / 54	plus	ABC00642 ABC10264
JLOC1	JLOC1_14771.1	1345	5e-22	1165 - 1219	100	55 / 55	plus
Harvest21	ABC10264	1197	3e-25	1122 - 1181	100	60 / 60	plus	ABC10264
Harvest35	U35_18216	1234	3e-25	1164 - 1223	100	60 / 60	plus

Contig Sequence (1234 bp)

>U35_18216 1234 Hv_44K_v2
GGATGTACGGTAAGGTGTGTGCCTTGAGAGTTGAGAGACTCAATTGACTTGACCGGACTC
GAACTCGACCAACCGCCGCGTCGAGCAGCGACTGCTCCCCACTCCGATTGAGTCGGCTCC
CATGGCGGCTCCACTGCCTCGCGCACCCTTCTCCTCGCCCGCGACCCGCGCCGCCCTATG
GCCAGCCCGCTCCAACCCTTGCACGGCTGCGGCGCCATCCTCGGGGGCCCTCGGGTGGCG
GCGCAGGCAGCCTTGCCCGGTGCTCTCCATGGCTCCGGGCTCCGCCCGGTCGACGCCAGC
AGCCCTCGCCGTCGATCCCAAGGTTGAAACGTTACTAGACAGTGTGAAGTGGGACGTCAA
AGGGCTGGCAGTTGCGATTGCGCAAAATGTGGATACTGGAGCCATTCTTATGCAGGGCTT
TGCTAACAAAGAGGCCCTTGCAGCAACTATATCGACCAGAAAAGCTACATTCTATAGCCG
TTCACGGTCTTCATTGTGGACTAAAGGGGAGACATCCATGAATTTCATCAATGTGCATGA
CATTTTCCTGGACTGTGACCGTGATTCAATAATATACCTTGGTACGCCAGATGGACCTAC
ATGCCATACAGGGGCAGAGACCTGCTACTATTCTTCAGTCTATGATGCACTACAAGATTC
AAAGTCCAATCAGGAGAGGCAGGTCACCACAACTCTCTACTCGCTGGAAGATACGATCAA
TAGGCGGAAGGAGGAGATAGTTACTGAAGGGATTGGTAAGCCATCATGGACGAAAAAACT
ACTGCTTGATGACCAGCTGCTTTGCTCGAAAATACGCGAAGAAGCTGGGGAACTAATTCA
AACACTGCTTGAGAACGAGGACAAAACCCGTACTGCCTCGGAGATGGCTGATTTGCTGTA
CCACGCAATGGTGCTTCTCAGTGTGAAGGATGTGAAGATGGAAGAGGTGCTGGAGGTCCT
GAGGAAACGGTTTTCCCAGTCCGGCGTTGAGGAGAAGGCCAGTCGCAAGAAATCTTAGTG
TGATCACCATGTAGGTGGATGAATTCTCTATCTGTTTGGGCAGGGTGTACTATGGAGTTG
TCCAGCTTTTTACAGATTTATGTTTTCTCATTATGCTCTCCAAGAAGAAGACTGAACTTG
GCTTGTGCTTTTTTCCCCCCTTGCACAGTCGCAGTGGCGCTGTTGCTGCTTTGGCCAATA
AAGTTTGTTTGCTGTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18216 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g16940.1	307	8e-156	protein\|MazG nucleotide pyrophosphohydrolase domain containing protein, expressed
Brachypodium v1_2	Bradi2g10490.1	298	0.0
Arabidopsis v10	AT1G31860.1	281	2e-114	\| Symbols: AT-IE, HISN2 \| histidine biosynthesis bifunctional protein (HISIE) \| chr1:11434250-11436530 REVERSE LENGTH=281