barSeed - Barley Seed Development Database

Probe CUST_22265_PI390587928

Source Contig U35_20538

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22265_PI390587928	Hv_44K_v2	AGTACTACTCATAGATAACTCGAAGCAGACATGTGCCTTTCTGCGCAGATTCCCTTGTAG	1288	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38062.3	355	2e-24	237 - 296	100	60 / 60	plus	ABC13019
MLOC	MLOC_38062.1	1002	2e-24	527 - 586	100	60 / 60	plus	ABC13019
MLOC	AK356819	1827	7e-23	1302 - 1361	98	59 / 60	plus	ABC06101 ABC13019
Harvest21	ABC13019	1400	3e-25	53 - 112	100	60 / 60	minus	ABC13019
Harvest35	U35_20538	1400	3e-25	1289 - 1348	100	60 / 60	plus

Contig Sequence (1400 bp)

>U35_20538 1400 Hv_44K_v2
CAGCGAGAGACACGGCGTCCCTCGGAGTGGCAGCGCCGCCGCCGACGCCGACGCGGGGTT
GAGCCGCCGCCGACGCCAGGATGCGGGGTCTGACGCGGGCGGGAAAGCGCGCCGGCGAGA
TGGCCTTGAACGCCGGCGGCGGAGCCATCAACTGGTTCCCCGGCCACATGGCTGCCGCCT
CGCGCGCCATCCGCGACCGCCTCAAGCTCGCCGACCTCGTCATCGAGGTCCGCGACGCCC
GCATTCCGTTATCCTCAGCGAACGAAGACCTTCAGCCGGTGCTTGCGGCCAAGAGGCGTA
TCCTTGCTCTAAACAAGAAAGATCTTGCGAATCCCAATATAATGAATATGTGGCTTGATC
ATTTTCAGTCACGTAAGCAAGATTGCATCTCATTAAACGCACATAGCAGCAACTCTATTA
ATCAGCTGCTTGGGCTTGTGGAGTTGAAACTAAGGGAATCAATCTTGAAAGAGCCCACAC
TTCTTGTTATGGTAGTTGGTGTCCCCAATGTTGGAAAGTCTGCACTCATTAATGCCATTC
ATCGAATTGCCAATTCTAGATTTCCAGTGAACGATAAGATCAAGCGGGCTAGAGTTGGAC
CTCTGCCTGGAGTTACACAAGACATTGCAGGATATAAGATTGCAAGCCAACCGAGCATTT
ACGTGCTTGATACACCAGGTGTTCTAGTGCCAAGCATTCCAGACATGGAAACAGGTCTAA
AGCTTGCTCTGACAGGAGCTGTCAAAGATTCGGTGGTTGGAGAGGAGCGTATAGCCAAAT
ATCTATTATCTCTTCTTAATATTAGAAAAACTCCTCTACACTGGGAGCGATTGCTTCACA
GAAGAGAAGAATTTGATGAAGAGCCAGATGTCAGTTGTGAAAAAGGGTCTAGTGGTTCAC
TGCGGAGGAGGCGGCGTTTTAACAATTCCGATGCCTTGTATGTTCAGGACCTGGTGATAG
AGGTCCAGAGAACCCTGTGCAGTACAGCCATGGAATTCACAGGCAATCTCGATGAAGATA
ACGAGCTGGAAAGTCTAATTGACTCGCAGCTTGTTGCCCTTCGAAAGGTGTTCAGAATAC
CCCACAAACCGCTTGATGATTCACATGGCCCAGCATCCAAGAAGTTATTGACTCTTTTCA
GATCAGGGAAACTCGGCCCGTTCATCCTCGATGACCTTCCTGACCAGCACTAAGGGGAAA
GAAGATTCACTTGCCTTTGAATGCCCAGGTGATTGCAACCTTCCAGGAATAGTTTTGCTA
TGAGGTAATGCGATGTGTCACACTGTTCAGTACTACTCATAGATAACTCGAAGCAGACAT
GTGCCTTTCTGCGCAGATTCCCTTGTAGGGCTTCTCCATTTGCTGCTTATCTGGTGGTGG
GTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20538 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g26030.1	371	0.0	protein\|GTPase of unknown function domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g19590.1	373	0.0
Arabidopsis v10	AT2G41670.1	386	2e-153	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:17374118-17376177 FORWARD LENGTH=386