barSeed - Barley Seed Development Database

Probe ABC13019

Source Contig ABC13019

barSeed

Links

Affymetrix Source Sequence (1400 bp)

>ABC13019 1400
CAGCGAGAGACACGGCGTCCCTCGGAGTGGCAGCGCCGCCGCCGACGCCGACGCGGGGTT
GAGCCGCCGCCGACGCCAGGATGCGGGGTCTGACGCGGGCGGGAAAGCGCGCCGGCGAGA
TGGCCTTGAACGCCGGCGGCGGAGCCATCAACTGGTTCCCCGGCCACATGGCTGCCGCCT
CGCGCGCCATCCGCGACCGCCTCAAGCTCGCCGACCTCGTCATCGAGGTCCGCGACGCCC
GCATTCCGTTATCCTCAGCGAACGAAGACCTTCAGCCGGTGCTTGCGGCCAAGAGGCGTA
TCCTTGCTCTAAACAAGAAAGATCTTGCGAATCCCAATATAATGAATATGTGGCTTGATC
ATTTTCAGTCACGTAAGCAAGATTGCATCTCATTAAACGCACATAGCAGCAACTCTATTA
ATCAGCTGCTTGGGCTTGTGGAGTTGAAACTAAGGGAATCAATCTTGAAAGAGCCCACAC
TTCTTGTTATGGTAGTTGGTGTCCCCAATGTTGGAAAGTCTGCACTCATTAATGCCATTC
ATCGAATTGCCAATTCTAGATTTCCAGTGAACGATAAGATCAAGCGGGCTAGAGTTGGAC
CTCTGCCTGGAGTTACACAAGACATTGCAGGATATAAGATTGCAAGCCAACCGAGCATTT
ACGTGCTTGATACACCAGGTGTTCTAGTGCCAAGCATTCCAGACATGGAAACAGGTCTAA
AGCTTGCTCTGACAGGAGCTGTCAAAGATTCGGTGGTTGGAGAGGAGCGTATAGCCAAAT
ATCTATTATCTCTTCTTAATATTAGAAAAACTCCTCTACACTGGGAGCGATTGCTTCACA
GAAGAGAAGAATTTGATGAAGAGCCAGATGTCAGTTGTGAAAAAGGGTCTAGTGGTTCAC
TGCGGAGGAGGCGGCGTTTTAACAATTCCGATGCCTTGTATGTTCAGGACCTGGTGATAG
AGGTCCAGAGAACCCTGTGCAGTACAGCCATGGAATTCACAGGCAATCTCGATGAAGATA
ACGAGCTGGAAAGTCTAATTGACTCGCAGCTTGTTGCCCTTCGAAAGGTGTTCAGAATAC
CCCACAAACCGCTTGATGATTCACATGGCCCAGCATCCAAGAAGTTATTGACTCTTTTCA
GATCAGGGAAACTCGGCCCGTTCATCCTCGATGACCTTCCTGACCAGCACTAAGGGGAAA
GAAGATTCACTTGCCTTTGAATGCCCAGGTGATTGCAACCTTCCAGGAATAGTTTTGCTA
TGAGGTAATGCGATGTGTCACACTGTTCAGTACTACTCATAGATAACTCGAAGCAGACAT
GTGCCTTTCTGCGCAGATTCCCTTGTAGGGCTTCTCCATTTGCTGCTTATCTGGTGGTGG
GTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK356819	1827	0.0	14 - 1396	99	1381 / 1383	CUST_22265_PI390587928	ABC06101 ABC13019
MLOC_53740.6	1202	0.0	199 - 1146	99	944 / 948	None	ABC06101 ABC13019
MLOC_53740.2	1147	0.0	131 - 1077	99	943 / 947	None	ABC06101 ABC13019
MLOC_53740.5	1319	0.0	917 - 1263	100	347 / 347	None	ABC13019
MLOC_53740.4	1291	0.0	848 - 1194	100	347 / 347	None	ABC13019
MLOC_53740.3	1384	0.0	941 - 1287	100	347 / 347	None	ABC13019
MLOC_53740.7	1270	0.0	880 - 1226	100	347 / 347	None	ABC13019
MLOC_38062.1	1002	0.0	183 - 621	99	437 / 439	CUST_22265_PI390587928	ABC13019
MLOC_53740.1	1014	0.0	131 - 518	99	385 / 388	None	ABC13019
MLOC_53740.8	1287	1e-108	441 - 660	99	218 / 220	None	ABC13019
MLOC_38062.2	496	8e-146	2 - 285	99	283 / 284	None	ABC13019
MLOC_38062.3	355	1e-123	88 - 331	99	243 / 244	CUST_22265_PI390587928	ABC13019