barSeed - Barley Seed Development Database

Probe CUST_22202_PI390587928

Source Contig U35_18240

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22202_PI390587928	Hv_44K_v2	ACTGGTGCTTTTTGGTTCCAGTGTGCTTTGACCTTGATGTGGCAACCATGCTTCTTTTGT	1078	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.369	1.428	1.109	0.782	0.344	0.344
Raw	5549.277	8866.983	6097.587	6646.020	1050.969	1130.019

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51141.5	7201	2e-24	153 - 212	100	60 / 60	minus	ABC08959 ABC41656 ABC47652
MLOC	MLOC_51141.3	7988	2e-24	4969 - 5028	100	60 / 60	minus	ABC08959 ABC18762 ABC47652
JLOC1	JLOC1_32644.3	6930	8e-25	6780 - 6839	100	60 / 60	plus
JLOC1	JLOC1_32644.2	6724	8e-25	6574 - 6633	100	60 / 60	plus
JLOC1	JLOC1_32644.1	6625	8e-25	6475 - 6534	100	60 / 60	plus
Harvest35	U35_18240	1141	3e-25	1079 - 1138	100	60 / 60	plus

Contig Sequence (1141 bp)

>U35_18240 1141 Hv_44K_v2
TGCAAAAGGAAGGAACAAAGGTCTTCGGTGTTCCAAAACCTGGAAAGAAGAAGAAGTTTA
TGGATGTAAGCAAACATTATGTTGGCGATCAAGCTGATAAGATTTCTGAGGGTAGTGCAG
CCAGCAGATTTGCAAAGCATCCAGTGCCACAGGTACCAAGACCACGGGAAAGTACCCTAA
AACTCGACCAGAGAGCCAAGAGGGCAAGTGACATGCGGTCCAGAGGACTTAAATCTGCGA
AGTCTCAGACAACATCAACTAACAGTGTTCCTGGCGAGGGTCCTTCATCCACTGCTGTCC
CAAGCTCTAGTGCTCTTGAAAGTACTTTCGCTTTTGCGGCAAGTACGGCAAGCTCTTCCA
ACCCAGTCAACATTACTGTAGAAAATAATAATTCTACTCATGCCACTGACCTTAGAACTG
AAGATGCTTCTATTCCGGAATCACGTTTACCAGCCACACCAACCATTCCTGCTATCAAGA
AGAATCCAAGTGCTGCTAATCGAGCTAAAAGGAAATTCGTTCCTTCTGCGGATAGTAACG
TGAACAGAAGGGTGCTGAAAACTCCTGACGTTTCAGCCAAGACTAGCTCAGATTCTGCTG
AACCCCGAAGGTCAAACCGCCGGATTCAACCAACTTCACGGTTGCTCGAGGGCCTGCAGA
GTTCTCTTATAGCCTCCAAAATTACTGGCGAAAAAGTCCCTAGGACTAATTTCAGGAGTG
CTACTTCTGCCTCAAGAGGAAAAGCTCATGGCTAATTCAAGGCACCGAGACGCGTGTTTG
TACATATCGGTAGCTTGCCGAGCATGGAAGCAAAAAGGATAGGATTTGAGTGAAGGCTTT
TGGACCTGGTGTGTGTGTGGATGTACTATAAAACTAGCTTAAGTTAGTGGCTTTTCTCTC
TTTATTGCACTGGACAGTATTATTGTGTCGTAGGATTAGCCATTAATCACCCCCAAACCC
TCCGTTTAATCTGTATGGATACAATGCCAAGGAGAAGAACGACGGGTTCTGGTTTAAACT
TACTCATCAACGGTTGTACTTTACCTTCTCTAGTACCAGCCCCATGTTGGAATGATTGAC
TGGTGCTTTTTGGTTCCAGTGTGCTTTGACCTTGATGTGGCAACCATGCTTCTTTTGTGC
A

Homology of Contig U35_18240 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g41030.2	2036	2e-65	protein\|agenet domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g33240.1	2045	5e-89
Arabidopsis v10	None