- Probe CUST_22201_PI390587928
- Source Contig U35_18241
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22201_PI390587928 | Hv_44K_v2 | TTTAACATTGGAAAAGGTGCAACTGAGATTAAAACCACCAGGCGACCCGGACTGCAAAAG | 481 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.470 | 1.805 | 1.120 | 0.684 | 0.526 | 0.373 |
| Raw | 1108.497 | 1098.127 | 686.357 | 599.194 | 174.030 | 137.497 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_51141.12 | 6460 | 2e-24 | 634 - 693 | 100 | 60 / 60 | minus | ABC08959 ABC41656 |
| MLOC | MLOC_51141.5 | 7201 | 2e-24 | 1283 - 1342 | 100 | 60 / 60 | minus | ABC08959 ABC41656 ABC47652 |
| MLOC | MLOC_51141.11 | 6622 | 2e-24 | 720 - 779 | 100 | 60 / 60 | minus | ABC08959 ABC41656 ABC47652 |
| MLOC | MLOC_51141.3 | 7988 | 2e-24 | 6099 - 6158 | 100 | 60 / 60 | minus | ABC08959 ABC18762 ABC47652 |
| MLOC | MLOC_51141.7 | 6871 | 2e-24 | 1052 - 1111 | 100 | 60 / 60 | minus | ABC08959 ABC41656 ABC47652 |
| MLOC | MLOC_51141.8 | 7002 | 2e-24 | 1006 - 1065 | 100 | 60 / 60 | minus | ABC08959 ABC41656 ABC47652 |
| MLOC | MLOC_51141.9 | 7007 | 2e-24 | 1006 - 1065 | 100 | 60 / 60 | minus | ABC08959 ABC41656 ABC47652 |
| MLOC | MLOC_51141.6 | 6944 | 2e-24 | 1122 - 1181 | 100 | 60 / 60 | minus | ABC08959 ABC41656 ABC47652 |
| MLOC | MLOC_51141.10 | 4283 | 2e-24 | 815 - 874 | 100 | 60 / 60 | minus | ABC08959 ABC41656 ABC47652 |
| JLOC1 | JLOC1_32644.3 | 6930 | 8e-25 | 5761 - 5820 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_32644.2 | 6724 | 8e-25 | 5555 - 5614 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_32644.1 | 6625 | 8e-25 | 5345 - 5404 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC08960 | 1008 | 3e-25 | 482 - 541 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_18241 | 1008 | 3e-25 | 482 - 541 | 100 | 60 / 60 | plus |
Contig Sequence (1008 bp)
>U35_18241 1008 Hv_44K_v2 ATTCCTTAGTTCTTGGTGCTTGGAATCTTCCACATCACTTGTTTGGCAGGATGGTAAATG GACAGAGTGGTCCCGTGCACGAGAGAGGAAAGATAAATCAAATAAGGGTGATTCTCCATA TGAGAAACGCCAGCGGACAGCAGTGAGCGATCCTGTGCCTGTTGTTGGAGAAGCACGGCC CCCTTCTAAAGACAAGAAGAGCACTAACACTGTAGTGAGCGATCCTGTGCCAACTGTTGG AGAAGCACGCCCCCCTACCAAGGACAAGAAGAGCACTAACACTGTAGCGAGCGACCCTGT GCTTACTGTTGGAGAAGCACGCCCCCCTGCCAAGGACAAGAAGAGCGTTAACACTGTAGC AAGCGACCCTGTGCTTACTGTTGGAGAAGCACGCCCCTTTACTAAGGACAAGAAGAGTGT TAACACTGTAGGAAAACCAGATGAGCCAAGGCCACTGGCTTTATCTGATAGGGACGTGCT TTTTAACATTGGAAAAGGTGCAACTGAGATTAAAACCACCAGGCGACCCGGACTGCAAAA GGAAGGAACAAAGGTCTTCGGTGTTCCAAAACCTGGAAAGAAGAAGAAGTTTATGGATGT AAGCAAACATTATGTTGGCGATCAAGCTGATAAGATTTCTGAGGGTAGTGCAGCCAGCAG ATTTGCAAAGCATCCAGTGCCACAGGTACCAAGACCACGGGAAAGTACCCTAAAACTCGA CCAGAGAGCCAAGAGGGCAAGTGACATGCGGTCCAGAGGACTTAAATCTGCGAAGTCTCA GACAACATCAACTAACAGTGTTCCTGGCGAGGGTCCTTCATCCACTGCTGTCCCAAGCTC TAGTGCTCTTGAAAGTACTTTCGCTTTTGCGGCAACCACACCAACCATTCCTGCTATCAA GAAGAATCCAAGTGCTGCTAATCGAGCTAAAAGGAAATTCGTTCCTTCTGCGGATAGTAA CGTGAACAGAAGGGTGCTGAAAACTCCTGACGTTTCAGCCAAGACTAG
Homology of Contig U35_18241 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi3g33240.1 | 2045 | 4e-60 | |
| Arabidopsis v10 | None |