barSeed - Barley Seed Development Database

Probe CUST_2218_PI390587928

Source Contig U35_14989

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2218_PI390587928	Hv_44K_v2	GGATATCTATCTTTGATGTGTTGGAACATTCTGATCTCAATAATCTGTAGGATCCATCAT	647	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62240.1	592	2e-24	352 - 411	100	60 / 60	minus	ABC01658 ABC13588
MLOC	MLOC_62239.1	353	2e-24	114 - 173	100	60 / 60	minus	ABC01658
MLOC	MLOC_70086.1	308	2e-23	150 - 207	100	58 / 58	minus	ABC01658
MLOC	MLOC_80725.1	282	7e-23	67 - 126	98	59 / 60	plus	ABC01658
MLOC	MLOC_48154.1	770	3e-22	297 - 352	100	56 / 56	minus	ABC01658
MLOC	MLOC_48155.1	718	3e-22	294 - 349	100	56 / 56	minus	ABC01658
MLOC	MLOC_41621.1	659	3e-21	326 - 385	97	58 / 60	plus	ABC01658
MLOC	MLOC_41621.2	604	3e-21	266 - 325	97	58 / 60	plus	ABC01658
JLOC1	JLOC1_40713.1	593	8e-25	353 - 412	100	60 / 60	minus
JLOC1	JLOC1_46492.1	308	1e-23	150 - 207	100	58 / 58	minus
JLOC1	JLOC1_53749.1	282	4e-23	67 - 126	98	59 / 60	plus
Harvest21	ABC01658	1412	3e-25	648 - 707	100	60 / 60	plus	ABC01658
Harvest35	U35_14989	1377	3e-25	648 - 707	100	60 / 60	plus

Contig Sequence (1377 bp)

>U35_14989 1377 Hv_44K_v2
GCCCAAGCTCTCCAGAGGAGGAGGAGGATCATCCGTCCTCGGGCAGAGAGATGGAGGGCC
TGGCGCAGTGGGCCGCGCTGCTGCGGGAGTCGCTGGGCCAGAGCCAGGCGGCCACAGACG
CCGTCGTCTCCATCCTCGGCTCCTTCGACAGCCGCCTTTCCGCGCTGACAGCCGCCTCTC
CCACTCCTCCGTCCACTGGAACTTGAACCGGAAGCAACCGCCACTCACCAGTGGGATTGT
TAACCTGTCTTTGTATGCTCCGAAACGGGCTTAGGACTTCATCCATTCTGCTGCGTTTAT
CAGGGCATCTGTCGATGGGAGACTAGTATTTCTACTGACTAGTAAACTCCTTGCAAATTG
GGAGATTCTGTGTGCTCTTCGGGCTCCTCGCTCTTCGCTTTCCCGGAAGCATGATATACT
AATCCTGAGGACTAAAGAAGTTGAGAAATATAGTGCCATCTCTGGTGGTTTACCTTGCTC
AATATATGTGTTAGTATTGAAAGTTGTACATATGAGCAAACCGAGTTTTGTTGAGCTTTG
CATTATGCTTTATACCACCCATTAAATATAAAATGTGCCTGCAATGCAAGACATTTTTGT
GTATATACGTTTTCTTGTTGCCGGATAGTTCAAATCTTGGCTTTGCTGGATATCTATCTT
TGATGTGTTGGAACATTCTGATCTCAATAATCTGTAGGATCCATCATATATTGTTTGTTG
TAAATTTGCTAGTTCTATTCCTACTAATGTGTGTGCCGCAAGCAAATCAAATTTACATAA
CTTTTTCATGTAGATTTGCAAAGCTGGCTAAATGCCTTTGTTTCATTGTCATTTCGTGTG
TAAATTTTGTTCATGACCACTTTGGACCATCTTCTCAAATAGCTCTGCTCTAGAAATAAC
CTATAACCCTTTCATTTGCTTAGCTCCCGAGTAGAATTTACAGGTTTGACTGAATTGTGG
AGAGGAATGGCGATTCGTTGCTGGTGCAGAGTCAGCAGTTCTTGGAGAAGGTTGCCAAGA
CGGTCTCCTTCCTCGCGCAGCCTGAAGGCTCATTCATGCTGTTGCTCACAGTTCAAAAGG
ACAGCGCGCTTGAGCTCCTAAACATGCGCCCCTTCTACTTCGTTTACTTATGTGGCGTGA
AGACATAAACAAACCTTTGGAGCCATAGTTGTCTTTTTGTCATCTAAAATAATAATGGTA
ACATATTAATACAAACAAAATAATATTCTAGCTCAAAAAATTGTATGTGAATAATGAATG
GATGCTATGGAACTATATTTGTTATGGAGCTATGTATGTATGGATGCTATGGAACTATAT
GTATATATGGATGTTATGGAATTTTGGATGTATGGATGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14989 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None