barSeed - Barley Seed Development Database

Probe CUST_22145_PI390587928

Source Contig U35_21708

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22145_PI390587928	Hv_44K_v2	CTTCTTTAGATTCAATGAGCACCTTGAGGCTTTATGAAAGCTTGAAAAGTAAGCTTGAAA	928	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53533.3	3575	2e-24	1957 - 2016	100	60 / 60	minus	ABC13470
MLOC	MLOC_53533.4	3573	2e-24	1955 - 2014	100	60 / 60	minus	ABC13470
MLOC	MLOC_53533.2	3589	2e-24	2008 - 2067	100	60 / 60	minus	ABC13470
MLOC	MLOC_53533.1	5124	2e-24	3506 - 3565	100	60 / 60	minus	ABC13470
JLOC1	JLOC1_34404.1	4533	8e-25	1458 - 1517	100	60 / 60	plus
Harvest21	ABC18258	714	3e-25	646 - 705	100	60 / 60	plus
Harvest35	U35_21708	997	3e-25	929 - 988	100	60 / 60	plus

Contig Sequence (997 bp)

>U35_21708 997 Hv_44K_v2
TGCACAGCCAAAACTGTGGTTAATGATGACATCAAACTGCCAAACAGGCCAAGTGGCTCT
GAGGTAGAGATGCATTGGCCTAATGGCTCCGAGATTGATGATTCTCTTCTAAATACTGGT
AAAGTCAAGAAGAGCCCTAAAATTCGTAAAGTCAAGAAGATCCCTCAGTTTGATGACTTG
GCTATAGATGGTTATAATGGAGCTGAGCATGAATGCACAGCCAAGACAGCGGTGCAGCCT
CCTCCAGCTAAAGCCCCCTTGTCTGAGGAGGCTAAAGATGCACGGAAGGCTCTTGCTACC
ATCTACGACAAAGTTCTGGTGGTTGACACGGTCGAATCAGCTAGGAGCGTTGTTCAGTTA
CTTACCACAAAGTACAAGAGCTTTATTCATGCATGTGACACAGAGGTGTCAAATATTGAT
GTTAAACAAGAGACACCAGTTGGCCATGGAGATGTCACATGCTTTAGCATCTATTCTGCC
AGTTCTGATGCTGAAGCTGATTTTGGAAATGGTAAAACATGTATTTGGGTGGATGTACTG
GATGGTGGAAGGGATGTCCTCATGGAGTTTGTTCCCTTTTTTGAAGATTCAGCGATCCGG
AAGGTATGGCACAACTATAGTTTCGATAAACATGTAATTGAGAACTATGGAATCAAAGTT
GCTGGATTTCATGCCGATACAATGCATCTCGCACGCCTTTGGGACTCTTCAAGAAGACTT
GATGGAGGATATTCACTCGAAGGACTCACAAATGACAGCAGAGTCATGAGTGCGGTCCCA
AAGGAACTACAAAAGATTGGAAAGAGATCAATGAAAACCATCTTTGGCAGGAAAAAGATT
AAAAAAGATGGCTCCGAAGGAAAAATTACCACCATAGAGTCTGTTGAGATTTTGCAAAGA
GAGGACAGAGAGCTGTGGATCAGCTATTCTTCTTTAGATTCAATGAGCACCTTGAGGCTT
TATGAAAGCTTGAAAAGTAAGCTTGAAAAAAAGCACT

Homology of Contig U35_21708 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g07840.1	1034	4e-134	protein\|PolI-like DNA polymerase, putative, expressed
Brachypodium v1_2	Bradi5g23367.1	1032	1e-174
Arabidopsis v10	AT1G50840.1	1050	8e-96	\| Symbols: POLGAMMA2 \| polymerase gamma 2 \| chr1:18839277-18844313 FORWARD LENGTH=1050