barSeed - Barley Seed Development Database

Probe CUST_22134_PI390587928

Source Contig U35_21719

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22134_PI390587928	Hv_44K_v2	AAATACACCTACAATGGAGATAAGTACGACGCCATAGCATCGCCAACAGGAGCAGCATAT	887	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76813.1	1780	2e-24	1034 - 1093	100	60 / 60	plus	ABC03332 ABC47740
JLOC1	JLOC1_51232.1	1982	8e-25	1035 - 1094	100	60 / 60	plus
Harvest21	ABC15727	1028	3e-25	888 - 947	100	60 / 60	plus
Harvest35	U35_21719	1029	3e-25	888 - 947	100	60 / 60	plus

Contig Sequence (1029 bp)

>U35_21719 1029 Hv_44K_v2
GGCACCAGGCTTGAGCAGCAGCAGTTGCACCAGCTAGCTACCTAGCTGCGCGCGCAGTAG
CTCGCTCGGTCGCAATGGCTAACACCCTGGGCATCCACTCACTTGTCCTCGTCCTCCTCC
TCCTGGCCTCCTCTTCCGCGTTTGCCGACGACGTGCTTGACCGGAAGGCTGGCGTGGCCG
TTGAGGCACGGCCAGCACCAGGAAAGTATGCCGTCATCATGGACGCCGGCAGCACGGGCA
CCCGCGTCCACGTCTTTCGGTTCGACAAGAAGATGGAGCTCGTCGACGTCGGTGACGACA
TAGAAGTCTTCGCCACGGTGAATCCCGGGCTAAGCTCGTATGCCGGACGGCCACAGGAGG
CTGCCAACTCCATCGTACCCCTGCTTGAGAAGGCCAACAGCGCTGTGCCTCGGTCGCTCA
TGAAGAGAACACCCGTTAAGCTTGGGGCGACGGCCGGACTCAGGCTCATCGGAGACGAGC
AGGCGGAGCAAATTCTTGAAGCAGTCAGGGGTGTAGTCCACACCAAGAGCAAGTTCCAGT
ACAATCCTAGTTGGATCAACGTTCTCGAGGGGTCTCAGGAGGGATCTTACTTATGGGTTG
CTCTAAACTATCTGTTGGATAAGCTGGGAGGAGAGTACACCAAGACGGTAGGTGTGATTG
ACCTTGGAGGTGGATCCGTGCAAATGGCATATGCAATTTCTGCTGATGCTGCTGCTACCG
CTCCTGTGGTTAAGGATCCGTATGTTACGAAAGAGTATCTCAAAGGAAGAGATTACAACG
TCTATGCTCACAGCTACTTGCACTACGGAGCAATGGCTGCTCGAGGAGAGATCTTCAAGG
CAAAGAATGGACCTATCAGCTACTGCATGCTGCGCGGATTCATTGGTAAATACACCTACA
ATGGAGATAAGTACGACGCCATAGCATCGCCAACAGGAGCAGCATATGACAAGTGCAGAG
AGGATGTGATCAAAGCACTAAAGCTGAGCGCACCCTGTGAAGCAAAGAACTGCACCTTCA
ATGGCGCGT

Homology of Contig U35_21719 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g02980.2	377	3e-148	protein\|nucleoside-triphosphatase, putative, expressed
Brachypodium v1_2	Bradi3g06420.1	455	2e-160
Arabidopsis v10	AT3G04080.1	471	3e-84	\| Symbols: ATAPY1, APY1 \| apyrase 1 \| chr3:1068068-1070917 REVERSE LENGTH=471